GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001791-TA|BGIBMGA001791-PA|undefined
         (163 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   5.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    20   9.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   9.0  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 33  IDALIHKVVPNDKVNEVADSLTNR 56
           +D L   + PN +V EV    +NR
Sbjct: 651 VDTLQQFLTPNMRVQEVVIQFSNR 674


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/28 (21%), Positives = 17/28 (60%)

Query: 36  LIHKVVPNDKVNEVADSLTNRHFDNKAL 63
           +++ ++  + ++  A  + N+H DN +L
Sbjct: 255 ILYCIIAKNLMSNAATLVLNKHIDNISL 282


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query: 15  SNAYILLQVRKNN 27
           +N Y++L++R NN
Sbjct: 651 NNGYVVLRLRANN 663


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,105
Number of Sequences: 317
Number of extensions: 1144
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 163
length of database: 114,650
effective HSP length: 52
effective length of query: 111
effective length of database: 98,166
effective search space: 10896426
effective search space used: 10896426
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)