GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001791-TA|BGIBMGA001791-PA|undefined
         (163 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    27   1.0  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    27   1.4  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   2.4  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    26   3.2  
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    25   4.2  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    24   9.7  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    24   9.7  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    24   9.7  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    24   9.7  

>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 60  NKALGIDKGDQNADEKIVVMLEDQKNIRRXXXXXXXXXXLFRSSVPKFE 108
           + +L I KG ++   ++ ++L+D + + R           F+SS   FE
Sbjct: 51  SNSLSIYKGSKSESAQVTLLLKDIQKVERSKSRTFCFKLRFKSSTKNFE 99


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 22  QVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDNKA 62
           +V +N  NK+T  A+       D VN+VA  +TNR  +  +
Sbjct: 452 RVAQNALNKTTYKAISAFNFATDMVNKVAGEITNREVEKSS 492


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 113 LVHFRSKPALMLEVDSNVVVDALSDILSSRHFQKNLDVLTKKMVMKF 159
           L HFRSK   + E        A+S +L     ++ L      M++KF
Sbjct: 166 LNHFRSKKIPLTEFALRYPESAVSKLLDQASIERTLRAQASAMIVKF 212


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 36  LIHKVVPNDKVNEVADSLTNRHFDN 60
           L HK++ +D  +E  DSL  R  DN
Sbjct: 216 LPHKILCSDAFSEAVDSLRERFVDN 240


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 15/63 (23%), Positives = 26/63 (41%)

Query: 11  STTISNAYILLQVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDNKALGIDKGDQ 70
           S  + +AY       N G++ T   L+H  +P   V +   +      D   +G D+  +
Sbjct: 180 SGNLEHAYCTETRPYNQGSRLTAFELVHDKIPATLVTDSTVASIMHKIDAIVVGADRVTR 239

Query: 71  NAD 73
           N D
Sbjct: 240 NGD 242


>SPAC31G5.15 |||phosphatidylserine decarboxylase
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 36 LIHKVVPNDKVNEVADSLTNRHFDNKALGIDKGDQNADEK 75
          LI K++ ND    V   +TN+  DN    +  GD++ D K
Sbjct: 22 LILKIIVNDVCCWVLIKVTNKQIDNVESCL-SGDESNDSK 60


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 6   DEKEYSTTISNAYILLQVRKNNGNKSTIDALIHKVVPN 43
           D K+ S   +NA I   V +N G+K  + + IH++  N
Sbjct: 127 DAKKNSKYEANAAINKAVNENFGSKENLLSKIHELASN 164


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/41 (24%), Positives = 25/41 (60%)

Query: 22  QVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDNKA 62
           ++RK+ G+   ++AL    V ++ +  V+D  T + +D+++
Sbjct: 127 KIRKHKGHAGVVNALDVLKVGSELLTSVSDDCTMKVWDSRS 167


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/26 (53%), Positives = 14/26 (53%)

Query: 118 SKPALMLEVDSNVVVDALSDILSSRH 143
           S PAL LE  SNV   AL D   S H
Sbjct: 707 STPALSLEAVSNVSRTALEDAERSLH 732


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,249
Number of Sequences: 5004
Number of extensions: 26929
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 9
length of query: 163
length of database: 2,362,478
effective HSP length: 68
effective length of query: 95
effective length of database: 2,022,206
effective search space: 192109570
effective search space used: 192109570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)