Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001791-TA|BGIBMGA001791-PA|undefined
(163 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626... 31 0.34
03_02_0944 - 12603801-12604919 29 1.8
03_05_0862 + 28353235-28354431 29 2.4
07_01_0236 - 1725061-1727070 28 3.2
06_03_1394 - 29848356-29848685,29848832-29848998,29849120-298492... 27 5.6
06_01_0504 + 3632108-3632281,3633532-3633699,3633797-3633883,363... 27 7.4
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 27 7.4
12_01_0447 - 3530766-3530942,3531058-3531147,3531396-3531478,353... 27 9.7
>03_02_0649 -
10162202-10162366,10162455-10162533,10162614-10162670,
10162741-10162847,10163365-10163580,10163690-10163734,
10164100-10164258,10164714-10164818,10164902-10165084,
10165490-10165546,10165625-10165720,10166970-10167104,
10167188-10167262,10167380-10167479,10167682-10167842,
10167921-10168068,10168706-10169111,10169794-10169860,
10169953-10170162,10170570-10170711,10170809-10170870,
10170965-10171037,10171876-10171985,10172087-10172227
Length = 1032
Score = 31.5 bits (68), Expect = 0.34
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 15 SNAYILLQVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDNKALGIDKGDQNAD 73
S+ + + RKNN + +T +++ V+P D++ + D L RHF A +++ N +
Sbjct: 364 SSEHAIFDQRKNNLS-ATASSMVMSVLPADRIMLLCDILIRRHFIYTATDMNEWHSNPE 421
>03_02_0944 - 12603801-12604919
Length = 372
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 36 LIHKVVPNDKVNEVADSLTNRHFDNKALGIDKGDQNAD 73
L++K +P DKV++V + F N + I++G Q A+
Sbjct: 196 LLNKTIPTDKVDKVVHVDMDSTFGNLSNNINEGKQEAE 233
>03_05_0862 + 28353235-28354431
Length = 398
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 21 LQVRKNNGNKSTIDALIHKVVP 42
L VR G S ID LIHK VP
Sbjct: 146 LNVRHGGGTVSRIDGLIHKAVP 167
>07_01_0236 - 1725061-1727070
Length = 669
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 8 KEYSTTISNAYILLQVRKNNGNKST-IDALIHKVVPNDKVNEVADS 52
K +S SN ++ L +KNNGN S I A+ V N+ + ++ D+
Sbjct: 117 KNFSRAFSNQFLGLLNKKNNGNTSNHIFAVELDTVLNNDMQDINDN 162
>06_03_1394 -
29848356-29848685,29848832-29848998,29849120-29849264,
29849380-29849814,29849896-29850179,29850260-29850455
Length = 518
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 44 DKVNEVADSLTNRHFDNKALGIDKGDQNADEKIVVMLEDQKNIR 87
D +N + D L N H + L I GD AD K E K R
Sbjct: 138 DALNWIMDYLVNAHPSDDVLYIQVGDPKADHKCWERPEKMKEKR 181
>06_01_0504 +
3632108-3632281,3633532-3633699,3633797-3633883,
3634766-3634876,3635114-3635205,3635288-3635393,
3635475-3635561,3637796-3638209
Length = 412
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 110 KPKLVHFRSKPALMLEVDSNVVVDALS 136
KP ++HF+ P +LE S V V LS
Sbjct: 136 KPSILHFQKHPGSLLEGFSGVQVSTLS 162
>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 27.1 bits (57), Expect = 7.4
Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 8/137 (5%)
Query: 10 YSTTISNAYILLQVRKNNGNKSTIDALIHKV-VPNDKVNEVADSLTNRHFDNKALGIDKG 68
Y T + +A + L V G++S A I + ++ ++ T +N +
Sbjct: 1160 YGTALDSAKMFLPVALPRGSRSRAAAKIKSARLEHENTRMISFGSTG---ENTSQEKHSE 1216
Query: 69 DQNADEKIVVMLEDQKNIRRXXXXXXXXXXLFRSSVPKFEWK----PKLVHFRSKPALML 124
+ KI+V + K++ LF S +P+ W+ P S +
Sbjct: 1217 ASLSVSKIIVGSDSDKSVTHTRVLTSMALGLFASKLPEGSWQVVLGPLASDLMSLSGVQR 1276
Query: 125 EVDSNVVVDALSDILSS 141
+V S V+V D+ S
Sbjct: 1277 QVASMVIVSWFKDLRKS 1293
>12_01_0447 -
3530766-3530942,3531058-3531147,3531396-3531478,
3531571-3531886,3531979-3532040,3532139-3532244,
3532346-3532412,3532495-3532608,3532706-3532784,
3533043-3533213,3534223-3534355,3534922-3535081,
3535179-3535330
Length = 569
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 43 NDKVNEVADSLTNRHFDNKALGIDKGDQNADEK 75
ND VN+VA+++ R +D+ L ++ D+ D +
Sbjct: 353 NDTVNDVANTVMQRFWDS-TLALESPDEECDSR 384
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,842,596
Number of Sequences: 37544
Number of extensions: 131862
Number of successful extensions: 336
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 8
length of query: 163
length of database: 14,793,348
effective HSP length: 77
effective length of query: 86
effective length of database: 11,902,460
effective search space: 1023611560
effective search space used: 1023611560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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