GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001791-TA|BGIBMGA001791-PA|undefined
         (163 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10164| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)                31   0.46 
SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25)                 27   5.7  
SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18)           27   5.7  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         27   7.6  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         27   7.6  
SB_41099| Best HMM Match : VWA (HMM E-Value=0)                         27   10.0 
SB_7606| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   10.0 
SB_3166| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   10.0 

>SB_10164| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)
          Length = 428

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 14/31 (45%), Positives = 24/31 (77%), Gaps = 2/31 (6%)

Query: 101 RSSVPKFEWKPKLVHFRSKPALMLEVDSNVV 131
           R+S  KF WK  ++HF+S+P+L+L +D+ +V
Sbjct: 63  RNSHLKFVWK--VLHFQSEPSLLLCLDATIV 91


>SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25)
          Length = 467

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 113 LVHFRSKPALMLEVDSNVVVDALSDILSSRHFQKNLDVLTKKMVMKFRS 161
           L+H   +P   L + S V+  A++  L+      NLDV  K    KF S
Sbjct: 18  LLHPNFRPVSNLPMVSKVIEKAVAKQLTKHIVSNNLDVSLKSSYKKFHS 66


>SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18)
          Length = 417

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/71 (22%), Positives = 35/71 (49%)

Query: 7   EKEYSTTISNAYILLQVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDNKALGID 66
           E+E  + I +A  + Q +K+N +K+T + ++ K   N+K+        +   + ++    
Sbjct: 244 EREVESEIMHAKPINQNKKSNNDKATTENVLEKQEINEKLRNDKKFADDFEKEMESSSQG 303

Query: 67  KGDQNADEKIV 77
           K  QN  + I+
Sbjct: 304 KHQQNKKQNII 314


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 21   LQVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDNKALGIDKG 68
            L +R+  G KS +  L   +  +D+V++ +  L  +H    ALGI KG
Sbjct: 2217 LFLRQPRGRKSVLVVLTDGI-SSDRVSKASRELHQKHVKVIALGIGKG 2263


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 119  KPALMLEVDSNVVVDALSDILS---SRHFQK 146
            KP   +EVD   ++D  S ILS   SRHF K
Sbjct: 2679 KPVCKVEVDVAFLIDGSSSILSRRTSRHFAK 2709


>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3373

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 25   KNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDNKALGIDKGDQNADEKIVVMLEDQK 84
            + + N+  +  L+   +  D+V+  A +L  R  +  ALGI  G +    ++ ++  D+K
Sbjct: 3286 RGSSNRKRVLVLVTDGISQDRVSRAAAALRKRRVEIFALGI--GPRIKRRQLTLVASDRK 3343

Query: 85   NI 86
            ++
Sbjct: 3344 HV 3345


>SB_7606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 1   MENDKDEKEYSTTISNAYILLQVRKNNGNKSTIDALIHKVV----PND---KVNEVADSL 53
           +++ +++K      ++A  L Q+ KNNG K+   A+   ++    PND   KV+      
Sbjct: 113 VQSTQNDKFGDYQCNSAMGLSQILKNNGQKANPQAIAKSIIASLPPNDLIEKVDIAGPGF 172

Query: 54  TNRHFDNK 61
            N H + K
Sbjct: 173 INVHMNKK 180


>SB_3166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 51  DSLTNRHFDNKALGIDKGDQNADEKIVVML-----EDQKNIRRXXXXXXXXXXLFRSSVP 105
           + L N  F NKA  I +  +    ++ + L     ED K   R            R   P
Sbjct: 119 NQLVNARFQNKA--ISRPIRATAPQLFICLYKLLEEDLKKYVRQSQKRMEILSFMRRDFP 176

Query: 106 KFEWKPKLVHFRSKPALMLEVDSNVVVD 133
            + W  + +  R +   + + D NV VD
Sbjct: 177 NYAWSLRSLDRRLRHFQIFDTDQNVTVD 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.131    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,756,736
Number of Sequences: 59808
Number of extensions: 176381
Number of successful extensions: 409
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 9
length of query: 163
length of database: 16,821,457
effective HSP length: 77
effective length of query: 86
effective length of database: 12,216,241
effective search space: 1050596726
effective search space used: 1050596726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)