Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001791-TA|BGIBMGA001791-PA|undefined
(163 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49830-3|AAV58879.1| 218|Caenorhabditis elegans Hypothetical pr... 28 3.8
U49830-1|AAK31483.1| 458|Caenorhabditis elegans Hypothetical pr... 28 3.8
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 27 6.6
AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical ... 27 6.6
AF003130-7|AAO38638.1| 247|Caenorhabditis elegans Dehydrogenase... 27 6.6
AF003130-6|AAO38639.1| 343|Caenorhabditis elegans Dehydrogenase... 27 6.6
AF003130-5|AAB54122.2| 368|Caenorhabditis elegans Dehydrogenase... 27 6.6
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 27 8.7
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 27 8.7
>U49830-3|AAV58879.1| 218|Caenorhabditis elegans Hypothetical
protein C33F10.4c protein.
Length = 218
Score = 27.9 bits (59), Expect = 3.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 11 STTISNAYILLQVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDNKALGIDKGDQ 70
ST S +L + R +G +T D LI K V DK+ E A+ + ALG +G
Sbjct: 24 STKFSKVVVLAR-RPVDG--ATGDKLIQKTVDFDKLEENAEDIQGVDVAFCALGTTRGKS 80
Query: 71 NAD 73
AD
Sbjct: 81 GAD 83
>U49830-1|AAK31483.1| 458|Caenorhabditis elegans Hypothetical
protein C33F10.4a protein.
Length = 458
Score = 27.9 bits (59), Expect = 3.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 11 STTISNAYILLQVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDNKALGIDKGDQ 70
ST S +L + R +G +T D LI K V DK+ E A+ + ALG +G
Sbjct: 264 STKFSKVVVLAR-RPVDG--ATGDKLIQKTVDFDKLEENAEDIQGVDVAFCALGTTRGKS 320
Query: 71 NAD 73
AD
Sbjct: 321 GAD 323
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 8 KEYSTTISNAYILLQVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDNKAL 63
+EY T++S+ + L K G DA K V +D E++ S+T FD +L
Sbjct: 7740 REYKTSVSDTKLYLFKSKQLG-----DAAFKKAVRSDLNEELSRSMTCNGFDELSL 7790
>AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical
protein Y71H10A.2 protein.
Length = 536
Score = 27.1 bits (57), Expect = 6.6
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 14 ISNAYILLQVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDN-KALGIDKGDQN- 71
I N Y++++ RK + + L+H + N E ++ FD KA+G D +N
Sbjct: 38 IQNIYLMIRTRKGKNPQERLSGLLHDPLFNRIRQEKPEA-----FDKLKAIGGDMMVENL 92
Query: 72 -ADEKIVVMLEDQKNI 86
D + V+++ D N+
Sbjct: 93 GMDPEDVMLIRDNVNV 108
>AF003130-7|AAO38638.1| 247|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform b protein.
Length = 247
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 22 QVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNR 56
+ RK+ GN ++DA + V ++ V EVA L +
Sbjct: 87 EARKSIGNGRSLDAFLMDVTSDESVGEVAKRLEKK 121
>AF003130-6|AAO38639.1| 343|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform c protein.
Length = 343
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 22 QVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNR 56
+ RK+ GN ++DA + V ++ V EVA L +
Sbjct: 87 EARKSIGNGRSLDAFLMDVTSDESVGEVAKRLEKK 121
>AF003130-5|AAB54122.2| 368|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform a protein.
Length = 368
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 22 QVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNR 56
+ RK+ GN ++DA + V ++ V EVA L +
Sbjct: 112 EARKSIGNGRSLDAFLMDVTSDESVGEVAKRLEKK 146
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 45 KVNEVADSLTNRHFDNKAL---GIDKGDQNADEKIVVMLEDQKNIRR 88
K+ ++ N FD K+L +GD+ ADEK + +++ K I R
Sbjct: 1395 KIAVAEANVDNAEFDEKSLPPMSNLQGDEEADEKYMELIQQLKPIER 1441
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 45 KVNEVADSLTNRHFDNKAL---GIDKGDQNADEKIVVMLEDQKNIRR 88
K+ ++ N FD K+L +GD+ ADEK + +++ K I R
Sbjct: 1395 KIAVAEANVDNAEFDEKSLPPMSNLQGDEEADEKYMELIQQLKPIER 1441
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.131 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,675,185
Number of Sequences: 27539
Number of extensions: 138277
Number of successful extensions: 381
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 9
length of query: 163
length of database: 12,573,161
effective HSP length: 76
effective length of query: 87
effective length of database: 10,480,197
effective search space: 911777139
effective search space used: 911777139
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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