GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001791-TA|BGIBMGA001791-PA|undefined
         (163 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.66 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   2.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   6.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.1  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 10  YSTTISNAYILLQVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDNKALGI 65
           Y     N  I+ Q   ++ ++ +   L H    +DK+++  ++LT +  DNK  G+
Sbjct: 203 YMVDNKNTLIIYQNADDSFHRLSSHTLNHN---SDKMSDQQENLTLKEVDNKVYGM 255


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 24  RKNNGNKSTIDALIHKVVPNDKVNEVADS 52
           R+ +G K   D L++ V+P    NE+  S
Sbjct: 371 RELDGEKQKTDRLLYSVLPISVANELRHS 399


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 24  RKNNGNKSTIDALIHKVVPNDKVNEVADS 52
           R+ +G K   D L++ V+P    NE+  S
Sbjct: 371 RELDGEKQKTDRLLYSVLPISVANELRHS 399


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/21 (33%), Positives = 15/21 (71%)

Query: 48  EVADSLTNRHFDNKALGIDKG 68
           ++  S+ +RH+  +A+ I+KG
Sbjct: 295 DLQTSIMSRHYSTRAIVIEKG 315


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 59  DNKALGIDKGDQNADEKIVVMLEDQK 84
           +NK     K +QNA+E IV  +E+ +
Sbjct: 150 NNKITMKSKKEQNAEEDIVDPVEENE 175


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 7   EKEYSTTISNAYILLQVRKNNGNKSTIDA 35
           E E  T  +   ++L+  + N N STI A
Sbjct: 202 EDEECTEATAGAVVLETCQRNSNNSTITA 230


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,180
Number of Sequences: 429
Number of extensions: 1511
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 163
length of database: 140,377
effective HSP length: 53
effective length of query: 110
effective length of database: 117,640
effective search space: 12940400
effective search space used: 12940400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)