GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001790-TA|BGIBMGA001790-PA|IPR011028|Cyclin-like,
IPR006671|Cyclin, N-terminal
         (361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0807 - 28192320-28192494,28192611-28192759,28192882-281929...    33   0.27 
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521...    30   3.3  
10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325...    29   4.4  
03_02_0103 + 5640652-5641029,5641458-5641693,5642292-5642367,564...    29   5.8  

>04_04_0807 -
           28192320-28192494,28192611-28192759,28192882-28192980,
           28193212-28193433,28193522-28193611,28193837-28193959,
           28194040-28194199,28194288-28194347,28194484-28194574,
           28194667-28194730
          Length = 410

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 80  FDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNISIDEYAARTNIKRTVSIEELV 139
           F+L  + L   +N+ DRFL K  V    +  + V+ M +     A +        +E+LV
Sbjct: 201 FELMDETLFLTVNIVDRFLEKQVVPRKKLQLVGVTAMLL-----ACKYEEVAVPVVEDLV 255

Query: 140 SISQSACTAGDVSRMSRVIQDKL 162
            IS  A T G +  M ++I + L
Sbjct: 256 LISDRAYTKGQILEMEKLILNTL 278


>06_03_1117 +
           27750291-27750338,27751360-27751812,27751987-27752161,
           27752227-27752551,27752705-27752786,27752820-27752889,
           27753341-27753420,27753514-27753750
          Length = 489

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 50  LRLPAESESGEVTTGARDGAAHVLRCLKVWFDLPADVLIGAINLF 94
           LR+P ++ +  VT GA   A+      + W D+P  V++  +  F
Sbjct: 310 LRIPTQTANRRVTNGAHQRASQQYSYNRFWQDIPILVMVSMLAYF 354


>10_08_0877 +
           21230447-21230815,21231855-21232208,21232417-21232504,
           21232844-21233268,21233477-21233632,21233849-21234016,
           21234170-21234310,21234393-21234629,21234710-21234823,
           21235096-21235272
          Length = 742

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 37  NEYLLLEQKSQPKLRLPAESESG-EVTTGARDGAAHVLR--CLKVWFDLPADVL 87
           NEYLL   K + +L +P E E G  + +  +D     L   CL V+F+ P   L
Sbjct: 337 NEYLLSSSKRRSELPVPIEKEKGVSLWSMIKDNVGKDLTRVCLPVYFNEPLSSL 390


>03_02_0103 +
           5640652-5641029,5641458-5641693,5642292-5642367,
           5642450-5642526,5642672-5642702,5642798-5642950,
           5643259-5643300,5643372-5643440,5643645-5643752
          Length = 389

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 6   ARHPDAAE-CRSP-VASTSRDDVDSAQQLYAT-----LNEYLL---LEQKSQPKLRLPAE 55
           +R P AA   R P  A  SR  V  A QL        ++ YL     EQ  +P +    E
Sbjct: 81  SREPGAAGGSREPGAAGGSRQPVPDAAQLAVVPYVEDIDRYLRSLEAEQTRRPMINYVQE 140

Query: 56  SESGEVTTGARDGAAHVLRCLKVWFDLPADVLIGAINLFDRFLTKM 101
            + G +    R      +  +   F+L  + L  A++  DRFL+K+
Sbjct: 141 IQGGIINMDVRGILVDWMADVAYVFNLQEETLHHAVSYVDRFLSKI 186


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,426,664
Number of Sequences: 37544
Number of extensions: 282616
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 4
length of query: 361
length of database: 14,793,348
effective HSP length: 83
effective length of query: 278
effective length of database: 11,677,196
effective search space: 3246260488
effective search space used: 3246260488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)