GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001790-TA|BGIBMGA001790-PA|IPR011028|Cyclin-like,
IPR006671|Cyclin, N-terminal
         (361 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52798| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.63 
SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.9  
SB_48625| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.4  
SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_52798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 32.3 bits (70), Expect = 0.63
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 138 LVSISQSACTAGDVSRMSRVIQDKLG 163
           L+ +S  +CT  D+ RM R+I DKLG
Sbjct: 14  LIGVSGLSCTPSDLLRMERIILDKLG 39


>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 116 MNISIDEYAARTNIKRTVSIEELVSISQSACTAGDVSRMSRVIQDKLGLARGTVSVT 172
           +N  ID Y   T       + E+V + ++   +   +R +R ++ + G+ RGT  VT
Sbjct: 76  LNYVIDAYRQATQESHGYLLREIVRLGETRAGSSASTRGTRAVRTRGGITRGTPRVT 132


>SB_48625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 44  QKSQPKLRLPAESESGEVTTGARDGAAHVLRCLKVWFDLPADVLIGA 90
           Q+  P LR     E+  +T  AR+    VL C K WFD   + ++ A
Sbjct: 64  QRRLPLLRNATVGEAEGLTEFARECTPRVLSCRKNWFDCAKNKVMNA 110


>SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 36  LNEYLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVLRCLKVWF--DLPADVLIG 89
           LN  L  E  S+  LR+ A    GEVT    D   ++  C KV++   +P +  +G
Sbjct: 512 LNHTLDREVVSKHSLRVTASDRGGEVTVNVLDSNDNIPVCDKVYYTISIPENTSVG 567


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,590,192
Number of Sequences: 59808
Number of extensions: 315895
Number of successful extensions: 742
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 738
Number of HSP's gapped (non-prelim): 4
length of query: 361
length of database: 16,821,457
effective HSP length: 83
effective length of query: 278
effective length of database: 11,857,393
effective search space: 3296355254
effective search space used: 3296355254
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)