GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001790-TA|BGIBMGA001790-PA|IPR011028|Cyclin-like,
IPR006671|Cyclin, N-terminal
         (361 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00055-11|AAN65307.1|  290|Caenorhabditis elegans Hypothetical p...    30   2.9  
U00055-10|AAN65306.1|  181|Caenorhabditis elegans Hypothetical p...    30   2.9  
U00055-9|AAL06042.1|  309|Caenorhabditis elegans Hypothetical pr...    30   2.9  
U00055-8|AAL06043.1|  311|Caenorhabditis elegans Hypothetical pr...    30   2.9  

>U00055-11|AAN65307.1|  290|Caenorhabditis elegans Hypothetical
           protein R02F2.1d protein.
          Length = 290

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 23  RDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVL-RCLKVW-F 80
           +D + S Q L   L    LL Q        P    SGE   G R+        C      
Sbjct: 2   QDGISSTQLLQMLLQREKLLYQN------YPLSLASGEGMIGWRERNRECAWMCAAAKRI 55

Query: 81  DLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 119
            L  D    A+++FDR +T +K+   +V C+ V  ++I+
Sbjct: 56  GLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIA 94


>U00055-10|AAN65306.1|  181|Caenorhabditis elegans Hypothetical
           protein R02F2.1c protein.
          Length = 181

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 23  RDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVL-RCLKVW-F 80
           +D + S Q L   L    LL Q        P    SGE   G R+        C      
Sbjct: 21  QDGISSTQLLQMLLQREKLLYQN------YPLSLASGEGMIGWRERNRECAWMCAAAKRI 74

Query: 81  DLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 119
            L  D    A+++FDR +T +K+   +V C+ V  ++I+
Sbjct: 75  GLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIA 113


>U00055-9|AAL06042.1|  309|Caenorhabditis elegans Hypothetical
           protein R02F2.1a protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 23  RDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVL-RCLKVW-F 80
           +D + S Q L   L    LL Q        P    SGE   G R+        C      
Sbjct: 21  QDGISSTQLLQMLLQREKLLYQN------YPLSLASGEGMIGWRERNRECAWMCAAAKRI 74

Query: 81  DLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 119
            L  D    A+++FDR +T +K+   +V C+ V  ++I+
Sbjct: 75  GLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIA 113


>U00055-8|AAL06043.1|  311|Caenorhabditis elegans Hypothetical
           protein R02F2.1b protein.
          Length = 311

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 23  RDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVL-RCLKVW-F 80
           +D + S Q L   L    LL Q        P    SGE   G R+        C      
Sbjct: 21  QDGISSTQLLQMLLQREKLLYQN------YPLSLASGEGMIGWRERNRECAWMCAAAKRI 74

Query: 81  DLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 119
            L  D    A+++FDR +T +K+   +V C+ V  ++I+
Sbjct: 75  GLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIA 113


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,038,156
Number of Sequences: 27539
Number of extensions: 237237
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 4
length of query: 361
length of database: 12,573,161
effective HSP length: 82
effective length of query: 279
effective length of database: 10,314,963
effective search space: 2877874677
effective search space used: 2877874677
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)