GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001790-TA|BGIBMGA001790-PA|IPR011028|Cyclin-like,
IPR006671|Cyclin, N-terminal
         (361 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    31   0.020
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    31   0.020
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    31   0.020
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   9.4  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 30.7 bits (66), Expect = 0.020
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 227 FHKLEKQLVEWSEKGMTVPEKVFYMY 252
           + KL+K+L EW+ K +T P   +Y+Y
Sbjct: 153 YDKLKKKLEEWTGKNITTPWDYYYIY 178


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 0.020
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 227 FHKLEKQLVEWSEKGMTVPEKVFYMY 252
           + KL+K+L EW+ K +T P   +Y+Y
Sbjct: 168 YDKLKKKLEEWTGKNITTPWDYYYIY 193


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 30.7 bits (66), Expect = 0.020
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 227 FHKLEKQLVEWSEKGMTVPEKVFYMY 252
           + KL+K+L EW+ K +T P   +Y+Y
Sbjct: 56  YDKLKKKLEEWTGKNITTPWDYYYIY 81


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 233 QLVEWSEKGMTVPEKVFYMY 252
           +L +W + G TV +KV Y+Y
Sbjct: 228 KLSQWRKDGGTVKKKVNYVY 247


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 79  WFDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNI 118
           W  +PA V+IG   + + F T    R        ++ MN+
Sbjct: 326 WNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV 365


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 79  WFDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNI 118
           W  +PA V+IG   + + F T    R        ++ MN+
Sbjct: 295 WNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV 334


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 79  WFDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNI 118
           W  +PA V+IG   + + F T    R        ++ MN+
Sbjct: 346 WNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV 385


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 79  WFDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNI 118
           W  +PA V+IG   + + F T    R        ++ MN+
Sbjct: 295 WNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV 334


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 14  CRSPVASTSRDDVDSAQQLYATLNEYLLLEQKSQPKLRLP 53
           C SP  +T RD     ++    L    + +  S P L  P
Sbjct: 618 CPSPPVTTKRDGTQETEERLPPLPPKRIRKMPSMPLLPRP 657


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,953
Number of Sequences: 429
Number of extensions: 2654
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 9
length of query: 361
length of database: 140,377
effective HSP length: 59
effective length of query: 302
effective length of database: 115,066
effective search space: 34749932
effective search space used: 34749932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)