GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001789-TA|BGIBMGA001789-PA|IPR011011|Zinc finger,
FYVE/PHD-type, IPR001841|Zinc finger, RING-type, IPR001965|Zinc
finger, PHD-type
         (760 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   3.4  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    24   4.4  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    24   4.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   7.8  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   7.8  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 701 ESKDKDLKQYVLSNVNNVVVRPQKEVGPIKRKYNKQEKSS 740
           E +D++    V SNV  V    +KE        NK+E +S
Sbjct: 433 EEEDEETSTTVFSNVEVVQEEAKKEESDSNNNNNKEEGNS 472


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 10/79 (12%)

Query: 414 LSPIKLLEKGVQEKINSEEIDNVIIDEKILEEVREK----------FRKPKPLCVKRKIV 463
           L  + +L  G   K+ ++ ++N+   +K L E+ +K          FR    L     ++
Sbjct: 83  LMVVAVLSSGTTFKLVAKTLENMTKIDKDLTELGQKKYLEKRNRHIFRTSVLLIFVMHLM 142

Query: 464 DEILQGLFDTVLKESKQKE 482
            + L GL+ T  K+SKQ E
Sbjct: 143 FDTLGGLYSTWSKKSKQVE 161


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 10/79 (12%)

Query: 414 LSPIKLLEKGVQEKINSEEIDNVIIDEKILEEVREK----------FRKPKPLCVKRKIV 463
           L  + +L  G   K+ ++ ++N+   +K L E+ +K          FR    L     ++
Sbjct: 83  LMVVAVLSSGTTFKLVAKTLENMTKIDKDLTELGQKKYLEKRNRHIFRTSVLLIFVMHLM 142

Query: 464 DEILQGLFDTVLKESKQKE 482
            + L GL+ T  K+SKQ E
Sbjct: 143 FDTLGGLYSTWSKKSKQVE 161


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 490 PKKREIKEETEPQ 502
           PKK+E+KEE E +
Sbjct: 212 PKKKEVKEEIEDE 224


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 109 FHLPCGREKNAVSLFYGNYKSY 130
           FH  CG +   +++ Y N  SY
Sbjct: 376 FHGLCGPKNPLINILYANMNSY 397


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,994
Number of Sequences: 317
Number of extensions: 6959
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 5
length of query: 760
length of database: 114,650
effective HSP length: 62
effective length of query: 698
effective length of database: 94,996
effective search space: 66307208
effective search space used: 66307208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)