Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001789-TA|BGIBMGA001789-PA|IPR011011|Zinc finger,
FYVE/PHD-type, IPR001841|Zinc finger, RING-type, IPR001965|Zinc
finger, PHD-type
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 31 0.79
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 31 0.79
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 30 1.4
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 1.8
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 29 2.4
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 29 3.2
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 29 3.2
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 28 4.2
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ... 28 4.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 5.5
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 28 5.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 5.5
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 7.3
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 27 7.3
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 27 7.3
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ... 27 9.7
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 30.7 bits (66), Expect = 0.79
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 164 DVFEHXXXXXXXXFVCLICYEEVEPYPGVQTFWPPCCARDAWFHRRCLQRMALTAGMHYL 223
D FE C ICY+++ Q PC F + CLQ+ ++
Sbjct: 92 DSFEPLSNDQLMDLTCPICYDDMNENDEKQATKMPC---GHIFGKNCLQKWL----ENHC 144
Query: 224 KCPLCNDKERFHEAV 238
CPLC KE HE V
Sbjct: 145 TCPLCR-KEVPHETV 158
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 30.7 bits (66), Expect = 0.79
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 422 KGVQEKINSEEIDNVIIDEKILEEVREKFRKPKPL 456
KG QE ++EE D+ DE +EE+ ++F+K K +
Sbjct: 180 KGQQESNSAEEYDDDDSDEDRMEEIFQQFKKEKQI 214
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 77 LAEIERAK-KHKCSYCS-RGGATLGCSVSQCRKQFHLPCGREKNAVSLFYGNYKSY 130
+A I +++ K C C R G + CS C +H+ C R Y + SY
Sbjct: 295 IASIPKSRWKLVCCICKLRWGTCVQCSDKNCYAAYHITCARRAGFFYKIYSHSASY 350
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 466 ILQGLFDTVLKESKQKEIIKKWCSPKKREIKEETEPQDIISEDTAVARNPSTPVK 520
++ L +TV K++E IKK+ S +++ + T +I+++ +V + T VK
Sbjct: 623 VISSLRETVAMLEKERESIKKYLSGNAKDL-DNTNLMEILNDKISVLQRQLTDVK 676
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 431 EEIDNVIIDEKILEEVREKFRKPKPLCVKRKIVDEILQGLFDTVLKESKQK 481
E ++N + DE ++ E + K K C+ VD+I + L + +L KQ+
Sbjct: 502 ETLNNDVDDESVIGEKEKLILKQKQKCLSEFFVDDIKKLLNEELLNCQKQE 552
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 661 RIDKKKKRDHKELNK--SKVYRKNERQKMKIRFKTRIKLK 698
+I KKKK++HK+ +K S RK+ + + K +IKLK
Sbjct: 194 KITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLK 233
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 440 EKILEEVREKFRKPKPLCVKRKIVDEILQGLFDTVLKESKQKEIIKK-----WCSPKKRE 494
EK+L+ ++ + + +VD ++ D+ L E K +I K W SP +E
Sbjct: 66 EKVLDTLKAEVEEKLASSQDLVLVDSDMEEQSDSNLMEVKDTNVINKSITSLWSSPNLKE 125
Query: 495 IKEETEPQDIISE 507
I E E + + E
Sbjct: 126 IDGEDEKKSVGQE 138
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 28.3 bits (60), Expect = 4.2
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 199 CCARDAWFHRRCLQR----MAL--TAGMHYLKCPLCNDKERFHEAVISQGYYIPDQDAAW 252
C + WFH +CLQ+ +A+ +L C C++K R H +++Q + + A
Sbjct: 141 CILCEDWFHEKCLQKTNKGIAIPDAETFEWLVCSECSEKYRDH--LLNQKH---ESIAGT 195
Query: 253 ELERNAYAEIYERNLRCDAEVC 274
E +E + NL C E C
Sbjct: 196 ERAPLFLSENFRENL-CPCESC 216
>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 4.2
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 386 QDLNLKPPRKPQYCLIKPTVLKNIEQNLLSPIK--------LLEKGVQEKINSEEIDNVI 437
QDL LK P +K L N++ + LS I LL+ NS+E D+
Sbjct: 177 QDLRLKNPWPELINYVKSMDLDNMDSSSLSEIPYIVLIIHVLLKVSPAHAQNSQEADDCA 236
Query: 438 IDEKILEEVREK 449
+ KI+EE + K
Sbjct: 237 MFRKIMEEYKGK 248
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 419 LLEKGVQEKINSEEI-DNVIIDEKILEEVREKFRKPKP 455
L +K QEK + EE+ D+V ID++I +++E +P P
Sbjct: 4041 LEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPP 4078
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 228 CNDKERFHEAVIS-QGYYIPDQDAAWE 253
CNDK + I +GY IPD+DA +E
Sbjct: 435 CNDKMKDGYFYIDIEGYLIPDEDAVYE 461
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.9 bits (59), Expect = 5.5
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 411 QNLLSPIKLLEKGVQEKINSEEIDNVIIDEKILEEVREKFRKPKPLCVKRKIVDEILQGL 470
QNL + + L + + + E D + LE ++ + K K EIL
Sbjct: 1545 QNLSAELAALREHSPTQGSLENADEIARLRSQLESTKQYYEKEKET--------EILAAR 1596
Query: 471 FDTVLKESKQKEIIKKWCSPKKREIKE-ETEPQDIISEDT 509
+ V ++ K KE ++ + K + IKE E + Q SE+T
Sbjct: 1597 SELVAEKEKTKEELENQLNEKSQRIKELEEQAQKNSSENT 1636
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 203 DAWFHRRCLQRMALTAGMHYLKCPLCNDKERFHEAVISQGYYIPDQDAAW 252
D + H RCL + T + LK LC+ ++ I+ YY D W
Sbjct: 443 DIYVHARCLFLLTKTLNLDSLKSILCSRVRLYYNIEIA--YYFTDVLLKW 490
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 445 EVREKFRKPKPLCVKRKIVDEILQGLFDTVLKESKQK-EIIKKWCSPKKREIKEETEPQD 503
E RE+ C K + + + +FD +L + II + + + + ++
Sbjct: 224 EFREELSGATTNCDKLDTLSKSIINIFDYLLSHLPESWSIITEHMAQELTKATYVSQSSS 283
Query: 504 IISEDTAVARNPSTPVKV 521
I SED +A+N P +V
Sbjct: 284 ISSEDEEIAKNADVPAEV 301
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/85 (21%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 664 KKKKRDHKELNKSKVYRKNERQKMKIRFKTRIK-LKVCESKDKDLKQYVLSNVNNVVVRP 722
KK K+D +K ++ +K++++ K + KT+ + +++ + + Q + + N
Sbjct: 80 KKHKKDKPSADKDRISKKDKKKSKKGKSKTKEESIEINAEEGAKIAQPAIGSANASNHND 139
Query: 723 QKEVGPIKRKYN---KQEKSSDNLV 744
++ +K+N KSS+NL+
Sbjct: 140 EEAYDRYIKKHNISFADPKSSENLL 164
>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 242
Score = 27.1 bits (57), Expect = 9.7
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 390 LKPPRKPQYCLIKPTVLKNIEQNLLSPIKLLEKGVQEKINSEEIDNVIIDEKILEEVREK 449
+ P KPQ L P + EQN LS +L E I++E +++ ++ + +
Sbjct: 103 MSPLTKPQDLLTHPAISSIFEQNYLS---ILASSALEIISAEHKYTAHLEQLMVALLGDD 159
Query: 450 FRKPKPLCVKRKIVDEILQGLFDTVLKE-SKQKEIIKKW 487
P P I E + L TV + K KE I+ W
Sbjct: 160 PSLPGPPHEVFGISPEQCRELTITVQEALEKSKEFIRCW 198
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.136 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,365
Number of Sequences: 5004
Number of extensions: 136883
Number of successful extensions: 385
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 23
length of query: 760
length of database: 2,362,478
effective HSP length: 78
effective length of query: 682
effective length of database: 1,972,166
effective search space: 1345017212
effective search space used: 1345017212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
- SilkBase 1999-2023 -