Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001789-TA|BGIBMGA001789-PA|IPR011011|Zinc finger,
FYVE/PHD-type, IPR001841|Zinc finger, RING-type, IPR001965|Zinc
finger, PHD-type
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0487 - 25585229-25585540,25585627-25585745,25586029-255861... 56 8e-08
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 52 2e-06
05_05_0278 - 23786507-23786875,23787191-23787315,23787499-237876... 46 1e-04
05_06_0046 - 25157093-25157431,25157810-25157928,25158024-251581... 43 0.001
08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119 36 0.091
08_01_0331 + 2966362-2966477,2966561-2966924,2966949-2967050,296... 35 0.21
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 34 0.48
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768... 33 1.1
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 32 1.5
05_04_0339 + 20397591-20397627,20398494-20398526,20399210-203994... 32 1.5
04_04_0015 + 22164889-22165000,22165135-22165167,22165992-221662... 32 1.5
08_01_0418 - 3716226-3716279,3716531-3716581,3716656-3716751,371... 32 2.0
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 32 2.0
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 31 2.6
05_01_0459 - 3637741-3637995,3638078-3638204,3641273-3641495,364... 31 2.6
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 31 3.4
07_01_0891 - 7447079-7447330,7447431-7447554,7449571-7449793,744... 31 3.4
08_02_0266 + 15051868-15052286,15052376-15052475,15053540-150535... 31 4.5
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 31 4.5
02_04_0461 - 23125260-23125868 31 4.5
02_04_0268 + 21435231-21435240,21435330-21435558,21435778-214358... 31 4.5
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240... 30 6.0
08_02_0703 - 20188489-20190246 30 6.0
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 30 6.0
01_01_0401 + 3043634-3043894,3045610-3045849 30 6.0
03_06_0561 + 34728428-34728439,34728529-34728615,34728729-347287... 30 7.9
03_06_0465 - 34130083-34130340,34130421-34130541,34131158-341311... 30 7.9
01_06_1602 - 38559661-38559936,38560008-38560137,38562550-385627... 30 7.9
>04_04_0487 -
25585229-25585540,25585627-25585745,25586029-25586194,
25586295-25586427,25586527-25586618,25586739-25586925,
25587183-25587271,25587318-25587379,25587462-25587567,
25587754-25588052,25588181-25588288,25588369-25588439,
25588792-25588871
Length = 607
Score = 56.4 bits (130), Expect = 8e-08
Identities = 26/69 (37%), Positives = 34/69 (49%)
Query: 70 GFLYRDILAEIERAKKHKCSYCSRGGATLGCSVSQCRKQFHLPCGREKNAVSLFYGNYKS 129
G + ++ E+ RA K KCS C GA LGC V CRK FH+PC + N+
Sbjct: 280 GDIANNLEPELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPCAHGISGCRWDDENFVM 339
Query: 130 YCQQHVPKQ 138
C H K+
Sbjct: 340 LCPSHSSKK 348
>01_06_0192 +
27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 52.0 bits (119), Expect = 2e-06
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 74 RDILAEIERAKKHKCSYCSRGGATLGCSVSQCRKQFHLPCGREKNAV 120
+++ A + R + KCS C R GAT+GC V +C K +HLPC R + +
Sbjct: 496 KNVRAALCRGRLLKCSRCGRPGATIGCRVDRCPKTYHLPCSRAEACI 542
>05_05_0278 -
23786507-23786875,23787191-23787315,23787499-23787664,
23787844-23787979,23788286-23788378,23788505-23788611,
23788719-23788905,23789616-23789722,23789811-23790065,
23791241-23791306,23791363-23791401
Length = 549
Score = 46.0 bits (104), Expect = 1e-04
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 79 EIERAKKHKCSYCSRGGATLGCSVSQCRKQFHLPC 113
EI+RA K KC C GA LGC ++C + +H+PC
Sbjct: 173 EIKRAAKLKCKRCKLPGAALGCYYTKCNRSYHVPC 207
>05_06_0046 -
25157093-25157431,25157810-25157928,25158024-25158189,
25158289-25158415,25158490-25158590,25158719-25158905,
25159000-25159100,25159220-25160194,25160325-25160423,
25160500-25160972,25161307-25161420,25161830-25161900,
25162015-25162086,25162334-25162377
Length = 995
Score = 42.7 bits (96), Expect = 0.001
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 75 DILAEIERAKKHKCSYCSRGGATLGCSVSQCRKQFHLPCGR 115
++ E+ R+++ KC+ C GA LGC CR+ FH C +
Sbjct: 663 NLTTELARSRRIKCACCGIKGAALGCFEMSCRRSFHFTCAK 703
>08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119
Length = 440
Score = 36.3 bits (80), Expect = 0.091
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 661 RIDKKKKRDHKELNKSKVYRKNERQKMKIRFKTRIKLKVCESKDKDLKQYVLSNVNNVVV 720
R KKKK+ K+ K K +K +++K K+RF ++CE+ + K Y+L VN++ +
Sbjct: 372 RKKKKKKKKKKKKKKKKKKKKKKKKKKKLRFVMIFFYQLCETVE---KMYLLWFVNHLAL 428
>08_01_0331 +
2966362-2966477,2966561-2966924,2966949-2967050,
2967127-2967209,2967306-2967422,2968085-2968187,
2968259-2968928,2969239-2969393,2969529-2969580,
2969734-2969825
Length = 617
Score = 35.1 bits (77), Expect = 0.21
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 178 VCLICYEEVEPYPGVQTFWPPCCARDAWFHRRCLQRMA--LTAGMHYLKCPLC 228
VC ICYE++ P P C FH CL++ G L CP+C
Sbjct: 9 VCTICYEDLRPLSDQHLHCLPACGH--VFHALCLEQWLEYCPGGKKKLTCPIC 59
>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 33.9 bits (74), Expect = 0.48
Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 10/127 (7%)
Query: 23 CAICGREVDDEVLYGKIYAIGDIQCHYFCVLLSCCLVQKGRETDGLFGFLYRDILAEIER 82
C +C D V + G C C L C G + G AE
Sbjct: 921 CELCQEMPSDVVAGSQSDCDGSKPCLLQCDL---CHGTSGAFRKTIKGRCIHAFCAEESL 977
Query: 83 AK-KHKCSYCSRG-GATLGCSVSQCRKQFHLPCGREKNAV--SLFYGN---YKSYCQQHV 135
K K C+ C R G+ L CS C+ FH C R+ + G+ +K+YC +H
Sbjct: 978 PKDKDTCAICHRNVGSCLKCSTVDCQITFHPTCARDAGFYMDTKTIGSTLEHKAYCGKHG 1037
Query: 136 PKQKVHD 142
+Q+ D
Sbjct: 1038 IEQRKAD 1044
>10_04_0022 +
7687383-7687670,7688479-7688556,7689456-7689535,
7689876-7690095,7690444-7690677
Length = 299
Score = 32.7 bits (71), Expect = 1.1
Identities = 23/113 (20%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 402 KPTVLKNIEQNLLSPIK-LLEKGVQEKINSEEIDNVIIDEKILEEVREKFRKPKPLCVKR 460
K LK +E+ L ++ + K V++++NSE+I N I ++ E +++ F + K
Sbjct: 152 KEAELKLLEEELARRVEESIRKNVEDRLNSEDIKNE-IKRRVEEGIKQLFDEVDAQLQKE 210
Query: 461 KIVDEILQGLFDTVLKESKQKEIIKKWCSPKKREIKEETEPQDIISEDTAVAR 513
K + L+ +E +++E + + +R+++E + + + + R
Sbjct: 211 K--ETALREARHKAEQERREREELDRMLEENRRKVEEAQRKEALEQQQKELER 261
>06_01_0778 +
5816588-5816885,5817554-5817615,5818764-5818905,
5819969-5820064,5820147-5820266,5820401-5820663,
5821507-5821617
Length = 363
Score = 32.3 bits (70), Expect = 1.5
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 430 SEEIDNVIIDEKILEEVREKFRKPKPLCVKRKIVDEILQGLFD--TVLKESKQKEIIKKW 487
SEE + V EK+ EK RK PL +K+K+ EIL+ + D ++Q+E ++ W
Sbjct: 115 SEERNKVKKLEKVFAR-EEKRRKELPLELKQKVSYEILERMRDLGENSNTTEQREALESW 173
Query: 488 CSPKKREIK 496
K ++I+
Sbjct: 174 RLEKLKDIR 182
>05_04_0339 +
20397591-20397627,20398494-20398526,20399210-20399438,
20402055-20402184,20402251-20402532
Length = 236
Score = 32.3 bits (70), Expect = 1.5
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 191 GVQTFWPPCCARDAWFHRRCLQ-RMALTAGMHYLKCPLCNDK 231
G FW C + + W+H +C++ A + + KCP C +K
Sbjct: 191 GKDEFWICCDSCERWYHGKCVKITPARAEHIKHYKCPDCGNK 232
>04_04_0015 +
22164889-22165000,22165135-22165167,22165992-22166220,
22166709-22166826,22166910-22167188
Length = 256
Score = 32.3 bits (70), Expect = 1.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 195 FWPPCCARDAWFHRRCLQ-RMALTAGMHYLKCPLCNDK 231
FW C + WFH +C++ A + + KCP C++K
Sbjct: 215 FWICCDICETWFHGKCVRITPAKAEHIKHYKCPGCSNK 252
>08_01_0418 -
3716226-3716279,3716531-3716581,3716656-3716751,
3717037-3717194,3717303-3717417,3717511-3717564,
3717843-3717950,3718494-3718583,3718818-3718856,
3718993-3719172,3719264-3719576,3719659-3719834
Length = 477
Score = 31.9 bits (69), Expect = 2.0
Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 3/150 (2%)
Query: 351 VMPSRMSLRRTKTDPKNVPSTSTAENKQGIMKVTRQDLNLKPPRKPQYCLIKPTVLKNIE 410
++ S L+R + K + K V + L+ K L K +
Sbjct: 258 IVESPEKLQRALEEKKTARAELKNAEKIATQSVQEKTATLEIYSKGYEKLSKHSTKIQAL 317
Query: 411 QNLLSPIKLLEKGVQE---KINSEEIDNVIIDEKILEEVREKFRKPKPLCVKRKIVDEIL 467
Q ++ K LEK V+ KI+ E ++ + +D KI+E + + + K K D+I+
Sbjct: 318 QEQVTATKALEKEVKARKTKISDESVEIMALDTKIIEWDGKVHEMEEHVKAKEKKKDQIV 377
Query: 468 QGLFDTVLKESKQKEIIKKWCSPKKREIKE 497
+ S + E K P++R+++E
Sbjct: 378 ADENQKLAALSSEVEWKLKCLEPRERKVEE 407
>02_05_0877 + 32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 31.9 bits (69), Expect = 2.0
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 85 KHKCSYCSRG-GATLGCSVSQCRKQFHLPCGREKNAVSLFYGN-----YKSYCQQHVPKQ 138
K C C GA L C+ C+ FH C R G+ +K+YC +H +Q
Sbjct: 1202 KDTCCVCLHTVGACLKCNNGDCQTTFHPYCARHAGFYMNTKGSGGILQHKAYCSKHSIEQ 1261
Query: 139 KVHD 142
K D
Sbjct: 1262 KEAD 1265
Score = 31.1 bits (67), Expect = 3.4
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 81 ERAKKHKCSYCS-RGGATLGCSVSQCRKQFHLPCGREKNAVSLFYGNY-------KSYCQ 132
E K CS C + G + CS CR FH C RE +G + +++C
Sbjct: 411 ENQWKLVCSICKVKHGVCVRCSHGTCRTPFHPICARESKHQMEIWGKFGYPNVELRAFCS 470
Query: 133 QH 134
+H
Sbjct: 471 KH 472
>11_01_0334 +
2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 31.5 bits (68), Expect = 2.6
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 416 PIKLLEKGVQEKINSEEIDNV-IIDEKILEEVREKFRKPKPLCVKRKIVDEILQGLFDTV 474
P +L G+Q+ ID + I+ E++ V + + KP + + V+E + D +
Sbjct: 187 PTVILLAGLQDVYRPAAIDQLTILGEQVGVPVYSEGTEAKPAQITKNAVEEAKRKNIDAI 246
Query: 475 LKESKQKEIIKKWCSPKKREIKEETEPQDII 505
+ ++ + I K + +E+K+ P +++
Sbjct: 247 VMDTAGRLQIDKSMMVELKEVKKAVNPTEVL 277
>05_01_0459 -
3637741-3637995,3638078-3638204,3641273-3641495,
3641592-3641624,3641716-3641854
Length = 258
Score = 31.5 bits (68), Expect = 2.6
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 195 FWPPCCARDAWFHRRCLQ-RMALTAGMHYLKCPLCNDK 231
FW C + W+H +C++ A + KCP C+ K
Sbjct: 217 FWIGCDVCERWYHGKCVKITPAKAESIKQYKCPSCSSK 254
>07_03_1219 +
24960043-24960133,24960304-24960336,24962258-24962486,
24963183-24963309,24963530-24963869,24964806-24965095
Length = 369
Score = 31.1 bits (67), Expect = 3.4
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 191 GVQTFWPPCCARDAWFHRRCLQ-RMALTAGMHYLKCPLCN 229
G FW C + WFH +C++ A + KCP C+
Sbjct: 220 GADEFWICCDICEKWFHGKCVKITPAKAEHIKQYKCPSCS 259
>07_01_0891 -
7447079-7447330,7447431-7447554,7449571-7449793,
7449891-7449923,7450042-7450144
Length = 244
Score = 31.1 bits (67), Expect = 3.4
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 195 FWPPCCARDAWFHRRCLQ-RMALTAGMHYLKCPLCNDKER 233
FW C + WFH +C++ A + + KCP C+ ++
Sbjct: 202 FWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCSSSKK 241
>08_02_0266 +
15051868-15052286,15052376-15052475,15053540-15053581,
15053734-15053930,15055412-15055508,15055604-15055699,
15056395-15056633,15056728-15056811,15056898-15057185,
15057658-15057718,15061093-15061362,15061663-15061722
Length = 650
Score = 30.7 bits (66), Expect = 4.5
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 88 CSYCSRGGATLGCSVSQCRKQFH 110
C+ C +GG LGC +C++ FH
Sbjct: 242 CAICDQGGILLGCK-GECKRSFH 263
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 30.7 bits (66), Expect = 4.5
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 664 KKKKRDHKELNKSKVYRKNERQKMKIRFKTRIKLKVCESKDKDLKQYVLSNVNNV 718
KKKK+ K+ K K +KN+++K K + K + K K + + Q+++S+ +++
Sbjct: 71 KKKKKKKKKKKKKKKKKKNKKKKKK-KKKKKKKKKKKKRWPSNKAQHIMSDTSHI 124
>02_04_0461 - 23125260-23125868
Length = 202
Score = 30.7 bits (66), Expect = 4.5
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 451 RKPKPLCVKRKIVDEILQGLFDTVLKESKQKEIIKKWCSPKKREIKEETEPQDIISEDTA 510
RKP PL +++ D+ L+ + + E K++ K K+RE +E+ + ++++ T
Sbjct: 97 RKPTPL--EQRARDKSLKRAYQARVAELKEEIRQSKAAKRKQREEREKRKKENVLRSGTK 154
Query: 511 VAR--NPSTPVKV 521
+ R NP T K+
Sbjct: 155 LQRVTNPKTIQKI 167
>02_04_0268 +
21435231-21435240,21435330-21435558,21435778-21435898,
21435992-21436264
Length = 210
Score = 30.7 bits (66), Expect = 4.5
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 195 FWPPCCARDAWFHRRCLQ-RMALTAGMHYLKCPLCNDK 231
FW C + WFH +C++ A + KCP C+ K
Sbjct: 169 FWICCDVCEKWFHGKCVRITPAKAEHIKQYKCPGCSSK 206
>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
21824135-21824224,21825033-21825603,21826097-21826734,
21826978-21827098,21827223-21827337,21828234-21829723,
21829830-21829901,21830151-21830196,21830413-21830515,
21830591-21830674,21831035-21831475,21831651-21831746,
21831896-21832045,21832131-21832274,21832414-21832527,
21832621-21832803,21832901-21832945,21833058-21833192
Length = 1764
Score = 30.3 bits (65), Expect = 6.0
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 75 DILAEIERAKKHKCSYCSR-GGATLGCSVSQCRKQFHLPCGREK 117
DI + +CS C+R GG+ +GC C FH C ++
Sbjct: 1465 DISGASPAKRNTECSMCNRTGGSFMGCRDVNCSVLFHPWCAHQR 1508
>08_02_0703 - 20188489-20190246
Length = 585
Score = 30.3 bits (65), Expect = 6.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 299 WSGRHARCGPAPPVCASCRPAA 320
W RH R PAPP A R AA
Sbjct: 111 WCARHGRAPPAPPSAAEAREAA 132
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 30.3 bits (65), Expect = 6.0
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 436 VIIDEKILEEVREKFRKPKPLCVKRKIVDEILQGLFDTVLKESKQKEIIKKWCSPKKREI 495
V+I + +++ + F K + K K ++ILQGL D K ++QK++I+K ++R
Sbjct: 144 VVIRNQEIQKAKVAFAKDEAELAKLKGEEKILQGLVD---KLTEQKKLIEK-AEEEERLR 199
Query: 496 KEETE 500
KE+ E
Sbjct: 200 KEKEE 204
>01_01_0401 + 3043634-3043894,3045610-3045849
Length = 166
Score = 30.3 bits (65), Expect = 6.0
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 23 CAICGREVDDEVLYGKIYAIGDIQCHYFCVLLSCCLVQKGRE 64
C C V+DE + D+ HYFC C L Q+GRE
Sbjct: 97 CGCCHGLVEDEGNREHLEVACDLATHYFC--HPCALCQEGRE 136
>03_06_0561 +
34728428-34728439,34728529-34728615,34728729-34728750,
34728843-34728925,34729139-34729171,34729468-34729546,
34729642-34729694,34729931-34729991,34730168-34730250,
34730418-34730513
Length = 202
Score = 29.9 bits (64), Expect = 7.9
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 438 IDEKILEEVREKFRKPKPLCVKRKIVDEIL-QGLFDTVLKESKQKEIIKKWCSPKKREIK 496
++ LE+V+++F K KRK Q L + +LK+ ++ E K+ KK+E K
Sbjct: 116 VERASLEQVQKRFESLK----KRKDPGSFSEQDLDERILKQQQEDEERKRQRKEKKKEKK 171
Query: 497 EE----TEPQDIISEDTA 510
+E EP++ I D A
Sbjct: 172 KELAAQNEPEEDIDPDVA 189
>03_06_0465 -
34130083-34130340,34130421-34130541,34131158-34131186,
34132259-34132382,34132594-34132816,34132948-34132980,
34133106-34133208
Length = 296
Score = 29.9 bits (64), Expect = 7.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 195 FWPPCCARDAWFHRRCLQ-RMALTAGMHYLKCPLCN 229
FW C + WFH +C++ A + + KCP C+
Sbjct: 252 FWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCS 287
>01_06_1602 -
38559661-38559936,38560008-38560137,38562550-38562778,
38563627-38563659,38563746-38563896
Length = 272
Score = 29.9 bits (64), Expect = 7.9
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 191 GVQTFWPPCCARDAWFHRRCLQ-RMALTAGMHYLKCPLCNDK 231
G FW C + W+H +C++ A + KCP C +K
Sbjct: 227 GKDEFWICCDNCEKWYHGKCVKITPARAEHIKQYKCPDCTNK 268
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,165,876
Number of Sequences: 37544
Number of extensions: 867033
Number of successful extensions: 2151
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2131
Number of HSP's gapped (non-prelim): 37
length of query: 760
length of database: 14,793,348
effective HSP length: 88
effective length of query: 672
effective length of database: 11,489,476
effective search space: 7720927872
effective search space used: 7720927872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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