Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001788-TA|BGIBMGA001788-PA|undefined
         (278 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.0  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    26   5.2  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   6.9  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    26   6.9  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 153 SVALFSTLSMSAQIKACVD-ALGYRKYEDAKLHGKDIPSLLRINDRAWSGMAQNLASVPD 211
           SV  F   S+S +++   +  +GY    D +L    +   +R+ +  +    Q+   + D
Sbjct: 166 SVGTFELGSLSMEMRPETNNVVGYENPSDPELVSSCVICSIRLANLVYIDRRQSSQQITD 225

Query: 212 YAPKPILTYNGIDYTN 227
           Y    + TY  +D +N
Sbjct: 226 YLDLSLQTYYSLDKSN 241


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 60   NDILARLKLKLVASQNRMWHVVNMSEQHTAGPITELIETLPEVIENNLKKGKHRFTRPEV 119
            N+ LA   LKL AS   +W  +N    H + P  E    LP  + N+L K        E+
Sbjct: 3942 NESLADSYLKL-ASTEPLWLFIN--NIHLSTPWAE---KLPSKMSNHLHKNSRIVCLSEI 3995

Query: 120  QTNLIGDLLYISVQLV 135
               L   LL IS  +V
Sbjct: 3996 HNQLPHQLLCISRSIV 4011


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 132 VQLVSDTKEGSTLYVATPPG-ESVALFSTLSMSAQIK 167
           V+ ++DT+   TLY+  PP  ES  + + L+ S Q++
Sbjct: 79  VKKLNDTELHQTLYIEHPPNLESSTILAELNRSKQLQ 115


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 209  VPDYAPKPILTYNGIDYTNRTYD 231
            +PD A  P+ T+N  DY N   D
Sbjct: 1461 IPDGASTPVTTFNVSDYLNYVID 1483


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 181 AKLHGKDIPSLLRINDRAWSGMAQNLASVPDYAPKPILTYNGIDYTNRT 229
           A LH   +PS L+  D  +S +  NL S  +      L  +G   T +T
Sbjct: 327 AMLHVASVPSTLQCRDNEFSTIFSNLESAIEEETGACLYISGTPGTGKT 375


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,151,728
Number of Sequences: 5004
Number of extensions: 43857
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 5
length of query: 278
length of database: 2,362,478
effective HSP length: 72
effective length of query: 206
effective length of database: 2,002,190
effective search space: 412451140
effective search space used: 412451140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)