GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001788-TA|BGIBMGA001788-PA|undefined
         (278 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   4.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.4  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 6   MPLQQCCVTVL------PEFGVKWREVFRAVRLARLPMTAASVARVL 46
           M L  C  TVL      PE  V  RE+ +AV    L +  ASV  +L
Sbjct: 116 MVLLVCTPTVLVEVNSRPETWVLGREMCKAVPFVELTVAHASVLTIL 162


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 6   MPLQQCCVTVL------PEFGVKWREVFRAVRLARLPMTAASVARVL 46
           M L  C  TVL      PE  V  RE+ +AV    L +  ASV  +L
Sbjct: 116 MVLLVCTPTVLVEVNSRPETWVLGREMCKAVPFVELTVAHASVLTIL 162


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,749
Number of Sequences: 317
Number of extensions: 2277
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 278
length of database: 114,650
effective HSP length: 56
effective length of query: 222
effective length of database: 96,898
effective search space: 21511356
effective search space used: 21511356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)