GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001788-TA|BGIBMGA001788-PA|undefined
         (278 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422...    32   0.59 
01_03_0156 + 13279354-13279479,13279722-13279790,13280102-132802...    29   3.1  
09_04_0753 + 19942397-19942805,19943457-19943866,19944252-19945121     29   5.5  
09_01_0180 + 2632507-2634870                                           28   9.5  
08_01_0397 - 3509186-3510291,3510322-3512335                           28   9.5  
04_04_0555 - 26210346-26211458,26211530-26211719,26211826-262119...    28   9.5  
03_05_0619 - 26180980-26181105,26181329-26181417,26181518-261816...    28   9.5  

>01_03_0076 -
           12241408-12241545,12241719-12241790,12242173-12242289,
           12243307-12245127,12245361-12245810
          Length = 865

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 1/90 (1%)

Query: 63  LARLKLKLVASQNRMWHVVNMSEQHTAGPITELI-ETLPEVIENNLKKGKHRFTRPEVQT 121
           LA   +  V S NR    V + +   +GPI  LI E L E    +L+   H F      T
Sbjct: 238 LASSAIDYVQSGNRRPSFVPVPDTRVSGPIFILIDECLDEAHLQHLQGSLHAFVDTLPPT 297

Query: 122 NLIGDLLYISVQLVSDTKEGSTLYVATPPG 151
             IG + Y     V D  EG+ +     PG
Sbjct: 298 ARIGIISYGRTVSVYDFSEGAAVSADVLPG 327


>01_03_0156 +
           13279354-13279479,13279722-13279790,13280102-13280272,
           13280358-13280464,13281332-13281437,13281540-13281586,
           13283429-13283747,13283917-13284006,13284095-13284157,
           13284303-13284377,13285379-13285441,13286677-13286700,
           13286926-13286978,13287687-13287861
          Length = 495

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 179 EDAKLHGKDIPSLLRINDRAWSGMAQNLASVP 210
           +  ++   D+ S+L ++D  WS +A+  ASVP
Sbjct: 229 DSTQIENDDMKSVLSLDDGRWSKLAEECASVP 260


>09_04_0753 + 19942397-19942805,19943457-19943866,19944252-19945121
          Length = 562

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 130 ISVQLVSDTKEGSTLYVATPPGESVALFSTLSMSAQIKACVDALGYRKYEDA-KLHGKDI 188
           +SV  V D K    L+VAT  G +V + + +S+   +   V+  G   +  A KL  +++
Sbjct: 249 LSVIHVEDNKGNRALHVATRKGNTVIVQTLISVKEIVINAVNRAGETAFAIAEKLGNEEL 308

Query: 189 PSLLR 193
            ++LR
Sbjct: 309 SNILR 313


>09_01_0180 + 2632507-2634870
          Length = 787

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 159 TLSMSAQIK---ACVDALGYRKYEDAKLHGKDIPSL 191
           T++ SA+++   +CVD  G    ED   HG+ +P L
Sbjct: 356 TITCSAELRLAESCVDIAGSEVIEDGARHGQKLPML 391


>08_01_0397 - 3509186-3510291,3510322-3512335
          Length = 1039

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 168 ACVDALGYRKYEDAKLHGKDIPSLLR 193
           A  +   YRK  + K+HGKD+P  ++
Sbjct: 399 AAEEVAAYRKQLELKVHGKDVPKPIK 424


>04_04_0555 -
           26210346-26211458,26211530-26211719,26211826-26211960,
           26212072-26212169,26212262-26212425,26213558-26214032
          Length = 724

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 126 DLLYISVQLVSDTKEGSTLYVATPPGESVALFSTLSMSAQIKACVDALGYRKYEDAKLHG 185
           +++  +  L+ D K G  L +A+P    V+     +M   I  CV  L Y+ +++  + G
Sbjct: 515 NIVSTAADLMQDFKTGY-LTLASPRSMFVSQVIGTAMGCVIAPCVFWLFYKAFDNIGISG 573

Query: 186 KDIPS 190
            D P+
Sbjct: 574 SDYPA 578


>03_05_0619 -
           26180980-26181105,26181329-26181417,26181518-26181629,
           26181711-26181848,26182004-26182150,26182458-26182532,
           26182627-26182668,26183033-26183152,26183806-26183880,
           26184051-26184113,26184690-26184759,26184877-26185006,
           26185097-26185328
          Length = 472

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 140 EGSTLYVATPPGESVALFSTLSMSAQIKACVDALGYRKYEDAKLHGKDIPSLLRIND 196
           +G     A PP    + F+ L +  ++ A  DA+G++  E  ++  + IP  L   D
Sbjct: 26  DGGEEQEAEPPARRPSTFAELGVVPELVAACDAMGWK--EPTRIQAEAIPHALEGRD 80


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,992,017
Number of Sequences: 37544
Number of extensions: 254239
Number of successful extensions: 564
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 8
length of query: 278
length of database: 14,793,348
effective HSP length: 81
effective length of query: 197
effective length of database: 11,752,284
effective search space: 2315199948
effective search space used: 2315199948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)