GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001788-TA|BGIBMGA001788-PA|undefined
         (278 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48827| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)              29   5.6  
SB_53454| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  
SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)            28   9.7  

>SB_48827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 184 HGKDIPSLLRINDRAWSGMAQNLASVPDYAPKPILTYNGIDYTNRTYDAEYIENILGXXX 243
           HG  + S ++  D     +A++   V DY P  +   N  +  N+   AE++ENILG   
Sbjct: 306 HGHTLTSKIKFKDII-QAVAEHAFKVSDY-PVILSLENHCNIENQRKIAEHLENILGDKL 363

Query: 244 XXXXXXXIKTSKP 256
                    TS P
Sbjct: 364 FKDPVDTALTSLP 376


>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
          Length = 1977

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 150 PGESVALFSTLSMSAQIKACVDALGYRKYEDAKLH----GKDIPSLLRINDRAWSGMA 203
           PG+S ++    S+ +QIK   D  G +K   A +H    G+  PS +   +R   G+A
Sbjct: 585 PGKSTSMVVPKSVYSQIKPQNDEKGAKKQPPAPMHVVTCGESTPSAVTHTERPLQGIA 642


>SB_53454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 46  LTRHIAKSLEAHELNDILARLKLKLVASQNRMWHVVNMSEQHTAGPITELIETLPEVIEN 105
           +T +    L  HE  + L+  K      Q +M   ++ +++    P+T L E  P+ +  
Sbjct: 205 ITENFVAQLSDHESTESLSTYKTAGEKHQRKMSRTLSCAQERKIVPVTRLEEVHPDSVYR 264

Query: 106 NL 107
           +L
Sbjct: 265 HL 266


>SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)
          Length = 1371

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 12/86 (13%)

Query: 82   NMSEQHTAGPITELIETLPEVIENNLK-----------KGKHRFTRPEVQTNLIGDLLYI 130
            N+SE+  +  +T  IE+ P ++   L+           +G+ +F RPEV  N++   L  
Sbjct: 1230 NISERFESRFVTVTIESSPALMLQGLEGSSLGVWVAHGEGRAQFVRPEVLDNVVSKNL-A 1288

Query: 131  SVQLVSDTKEGSTLYVATPPGESVAL 156
             V+ V D    +T Y   P G  + +
Sbjct: 1289 PVRYVDDDGNITTQYPLNPNGSPLGI 1314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,147,920
Number of Sequences: 59808
Number of extensions: 297397
Number of successful extensions: 577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 575
Number of HSP's gapped (non-prelim): 6
length of query: 278
length of database: 16,821,457
effective HSP length: 81
effective length of query: 197
effective length of database: 11,977,009
effective search space: 2359470773
effective search space used: 2359470773
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)