GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001788-TA|BGIBMGA001788-PA|undefined
         (278 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1398|AAN09623.1| 1100|Drosophila melanogaster CG2990-PB...    31   2.3  
AE014298-1397|AAF46543.1| 1119|Drosophila melanogaster CG2990-PA...    31   2.3  
AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin pro...    30   3.1  
AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC...    30   3.1  
AJ556818-1|CAD89223.1| 2162|Drosophila melanogaster SMG1 protein...    29   9.3  
AE014298-963|AAF46207.2| 3218|Drosophila melanogaster CG32743-PA...    29   9.3  

>AE014298-1398|AAN09623.1| 1100|Drosophila melanogaster CG2990-PB,
            isoform B protein.
          Length = 1100

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 52   KSLEAHELNDILARLKLKLVASQNRMWHVVNMSEQHTAGPITELIETLPEVIENNLKKGK 111
            +S EA  L D   RL + +  ++N++  + ++      GP  +L + +P+     L++G+
Sbjct: 1024 RSREAEILED-QRRLTVAITRAKNKLILLGDIKCLEQYGPFRQLFKHIPDRCRLKLEEGR 1082

Query: 112  HRFTRPEVQTNLIG 125
              F    +Q +L+G
Sbjct: 1083 MEFGWQRIQEDLVG 1096


>AE014298-1397|AAF46543.1| 1119|Drosophila melanogaster CG2990-PA,
            isoform A protein.
          Length = 1119

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 52   KSLEAHELNDILARLKLKLVASQNRMWHVVNMSEQHTAGPITELIETLPEVIENNLKKGK 111
            +S EA  L D   RL + +  ++N++  + ++      GP  +L + +P+     L++G+
Sbjct: 1043 RSREAEILED-QRRLTVAITRAKNKLILLGDIKCLEQYGPFRQLFKHIPDRCRLKLEEGR 1101

Query: 112  HRFTRPEVQTNLIG 125
              F    +Q +L+G
Sbjct: 1102 MEFGWQRIQEDLVG 1115


>AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin protein.
          Length = 16215

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 1/134 (0%)

Query: 94   ELIETLPEVIENNLKKGKHRFTRPEVQTNLIGDLLYISVQLVSDTKEGSTLYVATPPGES 153
            E+ E   + +E   K          VQ  L+     I  +++     G  +    PPGE+
Sbjct: 7835 EITEEQHQALETIEKLKPTSAIEDTVQQKLLSQEELIIAEVLPSETVGRDVTDVRPPGET 7894

Query: 154  VALFSTLSMSAQIKACVDALGYRKYEDAKLHGKDIPSLLRINDRAWSGMAQNLASVPDYA 213
            ++   T +MS  I  C       + + A     + PS+     +A  G    +    D+ 
Sbjct: 7895 ISPRLTPNMSLCITECQPEDSIGEMQQAAKERMETPSMSVTESKAVGGQELEVLENVDHM 7954

Query: 214  PKPILTYNGI-DYT 226
            P       G+ DYT
Sbjct: 7955 PLITQPTKGLADYT 7968


>AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC,
            isoform C protein.
          Length = 18074

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 1/134 (0%)

Query: 94   ELIETLPEVIENNLKKGKHRFTRPEVQTNLIGDLLYISVQLVSDTKEGSTLYVATPPGES 153
            E+ E   + +E   K          VQ  L+     I  +++     G  +    PPGE+
Sbjct: 7835 EITEEQHQALETIEKLKPTSAIEDTVQQKLLSQEELIIAEVLPSETVGRDVTDVRPPGET 7894

Query: 154  VALFSTLSMSAQIKACVDALGYRKYEDAKLHGKDIPSLLRINDRAWSGMAQNLASVPDYA 213
            ++   T +MS  I  C       + + A     + PS+     +A  G    +    D+ 
Sbjct: 7895 ISPRLTPNMSLCITECQPEDSIGEMQQAAKERMETPSMSVTESKAVGGQELEVLENVDHM 7954

Query: 214  PKPILTYNGI-DYT 226
            P       G+ DYT
Sbjct: 7955 PLITQPTKGLADYT 7968


>AJ556818-1|CAD89223.1| 2162|Drosophila melanogaster SMG1 protein
            protein.
          Length = 2162

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 133  QLVSDTKEGSTLYVATPPGESVALFSTLSMSAQIKACVDALGYRKYEDAKLHGKDIPSLL 192
            QL++D  E      + PP  +          A I+  VDAL +R+Y +A    K +  +L
Sbjct: 1790 QLLADL-EALVAVTSRPPETTYERSFRKRFDAPIRLTVDALRHRRYPEAWDKLKQLYHIL 1848

Query: 193  RINDRAWSGMA---QNLASVPDYAPKPILTYNGIDYTNRTYDAEYIENI 238
            + N    SG     Q+++ V     +  ++  G+D      D  YIE++
Sbjct: 1849 QSNMIRGSGSTLKMQSISPVLCGIGRMRISMPGLDAHGPDGDQVYIESV 1897


>AE014298-963|AAF46207.2| 3218|Drosophila melanogaster CG32743-PA
            protein.
          Length = 3218

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 133  QLVSDTKEGSTLYVATPPGESVALFSTLSMSAQIKACVDALGYRKYEDAKLHGKDIPSLL 192
            QL++D  E      + PP  +          A I+  VDAL +R+Y +A    K +  +L
Sbjct: 1790 QLLADL-EALVAVTSRPPETTYERSFRKRFDAPIRLTVDALRHRRYPEAWDKLKQLYHIL 1848

Query: 193  RINDRAWSGMA---QNLASVPDYAPKPILTYNGIDYTNRTYDAEYIENI 238
            + N    SG     Q+++ V     +  ++  G+D      D  YIE++
Sbjct: 1849 QSNMIRGSGSTLKMQSISPVLCGIGRMRISMPGLDAHGPDGDQVYIESV 1897


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,820,365
Number of Sequences: 52641
Number of extensions: 441901
Number of successful extensions: 1102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1096
Number of HSP's gapped (non-prelim): 10
length of query: 278
length of database: 24,830,863
effective HSP length: 84
effective length of query: 194
effective length of database: 20,409,019
effective search space: 3959349686
effective search space used: 3959349686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)