GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001788-TA|BGIBMGA001788-PA|undefined
         (278 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92833-9|CAD54141.2|  665|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z92833-8|CAI70417.1|  719|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z92833-7|CAB07381.1|  825|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z92833-6|CAB07380.1|  823|Caenorhabditis elegans Hypothetical pr...    31   0.91 
AL023842-11|CAD54168.2|  665|Caenorhabditis elegans Hypothetical...    31   0.91 
AL023842-10|CAI70400.1|  719|Caenorhabditis elegans Hypothetical...    31   0.91 
AL023842-9|CAA19521.1|  825|Caenorhabditis elegans Hypothetical ...    31   0.91 
AL023842-8|CAA19520.1|  823|Caenorhabditis elegans Hypothetical ...    31   0.91 
AF364604-1|AAK62778.1|  719|Caenorhabditis elegans hypoxia-induc...    31   0.91 
AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF098992-11|AAC67462.2|  530|Caenorhabditis elegans Hypothetical...    28   6.4  

>Z92833-9|CAD54141.2|  665|Caenorhabditis elegans Hypothetical
           protein F38A6.3d protein.
          Length = 665

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 44  RVLTRHIAKSLEAHELNDILARLKLKL-VASQNRMWHVVNMSEQHTAGPITELIETLPEV 102
           R  +RH A+   + E +DI   LK+ + +  +  + H+  ++    A  I  L +T   V
Sbjct: 13  RETSRHAARDRRSKE-SDIFDDLKMCVPIVEEGTVTHLDRIALLRVAATICRLRKTAGNV 71

Query: 103 IENNLKKGKHRFTRPEVQTNLIGDLLYISVQLVSDTKEGSTLYVATPPGESVALFSTLSM 162
           +ENNL    +  T      + I + L   V +V    + S LYV     ESVA++  L+ 
Sbjct: 72  LENNL---DNEITNEVWTEDTIAECLDGFVMIVD--SDSSILYVT----ESVAMYLGLTQ 122

Query: 163 S 163
           +
Sbjct: 123 T 123


>Z92833-8|CAI70417.1|  719|Caenorhabditis elegans Hypothetical
           protein F38A6.3e protein.
          Length = 719

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 44  RVLTRHIAKSLEAHELNDILARLKLKL-VASQNRMWHVVNMSEQHTAGPITELIETLPEV 102
           R  +RH A+   + E +DI   LK+ + +  +  + H+  ++    A  I  L +T   V
Sbjct: 13  RETSRHAARDRRSKE-SDIFDDLKMCVPIVEEGTVTHLDRIALLRVAATICRLRKTAGNV 71

Query: 103 IENNLKKGKHRFTRPEVQTNLIGDLLYISVQLVSDTKEGSTLYVATPPGESVALFSTLSM 162
           +ENNL    +  T      + I + L   V +V    + S LYV     ESVA++  L+ 
Sbjct: 72  LENNL---DNEITNEVWTEDTIAECLDGFVMIVD--SDSSILYVT----ESVAMYLGLTQ 122

Query: 163 S 163
           +
Sbjct: 123 T 123


>Z92833-7|CAB07381.1|  825|Caenorhabditis elegans Hypothetical
           protein F38A6.3b protein.
          Length = 825

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 44  RVLTRHIAKSLEAHELNDILARLKLKL-VASQNRMWHVVNMSEQHTAGPITELIETLPEV 102
           R  +RH A+   + E +DI   LK+ + +  +  + H+  ++    A  I  L +T   V
Sbjct: 117 RETSRHAARDRRSKE-SDIFDDLKMCVPIVEEGTVTHLDRIALLRVAATICRLRKTAGNV 175

Query: 103 IENNLKKGKHRFTRPEVQTNLIGDLLYISVQLVSDTKEGSTLYVATPPGESVALFSTLSM 162
           +ENNL    +  T      + I + L   V +V    + S LYV     ESVA++  L+ 
Sbjct: 176 LENNL---DNEITNEVWTEDTIAECLDGFVMIVD--SDSSILYVT----ESVAMYLGLTQ 226

Query: 163 S 163
           +
Sbjct: 227 T 227


>Z92833-6|CAB07380.1|  823|Caenorhabditis elegans Hypothetical
           protein F38A6.3a protein.
          Length = 823

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 44  RVLTRHIAKSLEAHELNDILARLKLKL-VASQNRMWHVVNMSEQHTAGPITELIETLPEV 102
           R  +RH A+   + E +DI   LK+ + +  +  + H+  ++    A  I  L +T   V
Sbjct: 117 RETSRHAARDRRSKE-SDIFDDLKMCVPIVEEGTVTHLDRIALLRVAATICRLRKTAGNV 175

Query: 103 IENNLKKGKHRFTRPEVQTNLIGDLLYISVQLVSDTKEGSTLYVATPPGESVALFSTLSM 162
           +ENNL    +  T      + I + L   V +V    + S LYV     ESVA++  L+ 
Sbjct: 176 LENNL---DNEITNEVWTEDTIAECLDGFVMIVD--SDSSILYVT----ESVAMYLGLTQ 226

Query: 163 S 163
           +
Sbjct: 227 T 227


>AL023842-11|CAD54168.2|  665|Caenorhabditis elegans Hypothetical
           protein F38A6.3d protein.
          Length = 665

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 44  RVLTRHIAKSLEAHELNDILARLKLKL-VASQNRMWHVVNMSEQHTAGPITELIETLPEV 102
           R  +RH A+   + E +DI   LK+ + +  +  + H+  ++    A  I  L +T   V
Sbjct: 13  RETSRHAARDRRSKE-SDIFDDLKMCVPIVEEGTVTHLDRIALLRVAATICRLRKTAGNV 71

Query: 103 IENNLKKGKHRFTRPEVQTNLIGDLLYISVQLVSDTKEGSTLYVATPPGESVALFSTLSM 162
           +ENNL    +  T      + I + L   V +V    + S LYV     ESVA++  L+ 
Sbjct: 72  LENNL---DNEITNEVWTEDTIAECLDGFVMIVD--SDSSILYVT----ESVAMYLGLTQ 122

Query: 163 S 163
           +
Sbjct: 123 T 123


>AL023842-10|CAI70400.1|  719|Caenorhabditis elegans Hypothetical
           protein F38A6.3e protein.
          Length = 719

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 44  RVLTRHIAKSLEAHELNDILARLKLKL-VASQNRMWHVVNMSEQHTAGPITELIETLPEV 102
           R  +RH A+   + E +DI   LK+ + +  +  + H+  ++    A  I  L +T   V
Sbjct: 13  RETSRHAARDRRSKE-SDIFDDLKMCVPIVEEGTVTHLDRIALLRVAATICRLRKTAGNV 71

Query: 103 IENNLKKGKHRFTRPEVQTNLIGDLLYISVQLVSDTKEGSTLYVATPPGESVALFSTLSM 162
           +ENNL    +  T      + I + L   V +V    + S LYV     ESVA++  L+ 
Sbjct: 72  LENNL---DNEITNEVWTEDTIAECLDGFVMIVD--SDSSILYVT----ESVAMYLGLTQ 122

Query: 163 S 163
           +
Sbjct: 123 T 123


>AL023842-9|CAA19521.1|  825|Caenorhabditis elegans Hypothetical
           protein F38A6.3b protein.
          Length = 825

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 44  RVLTRHIAKSLEAHELNDILARLKLKL-VASQNRMWHVVNMSEQHTAGPITELIETLPEV 102
           R  +RH A+   + E +DI   LK+ + +  +  + H+  ++    A  I  L +T   V
Sbjct: 117 RETSRHAARDRRSKE-SDIFDDLKMCVPIVEEGTVTHLDRIALLRVAATICRLRKTAGNV 175

Query: 103 IENNLKKGKHRFTRPEVQTNLIGDLLYISVQLVSDTKEGSTLYVATPPGESVALFSTLSM 162
           +ENNL    +  T      + I + L   V +V    + S LYV     ESVA++  L+ 
Sbjct: 176 LENNL---DNEITNEVWTEDTIAECLDGFVMIVD--SDSSILYVT----ESVAMYLGLTQ 226

Query: 163 S 163
           +
Sbjct: 227 T 227


>AL023842-8|CAA19520.1|  823|Caenorhabditis elegans Hypothetical
           protein F38A6.3a protein.
          Length = 823

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 44  RVLTRHIAKSLEAHELNDILARLKLKL-VASQNRMWHVVNMSEQHTAGPITELIETLPEV 102
           R  +RH A+   + E +DI   LK+ + +  +  + H+  ++    A  I  L +T   V
Sbjct: 117 RETSRHAARDRRSKE-SDIFDDLKMCVPIVEEGTVTHLDRIALLRVAATICRLRKTAGNV 175

Query: 103 IENNLKKGKHRFTRPEVQTNLIGDLLYISVQLVSDTKEGSTLYVATPPGESVALFSTLSM 162
           +ENNL    +  T      + I + L   V +V    + S LYV     ESVA++  L+ 
Sbjct: 176 LENNL---DNEITNEVWTEDTIAECLDGFVMIVD--SDSSILYVT----ESVAMYLGLTQ 226

Query: 163 S 163
           +
Sbjct: 227 T 227


>AF364604-1|AAK62778.1|  719|Caenorhabditis elegans hypoxia-induced
           factor 1 protein.
          Length = 719

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 44  RVLTRHIAKSLEAHELNDILARLKLKL-VASQNRMWHVVNMSEQHTAGPITELIETLPEV 102
           R  +RH A+   + E +DI   LK+ + +  +  + H+  ++    A  I  L +T   V
Sbjct: 13  RETSRHAARDRRSKE-SDIFDDLKMCVPIVEEGTVTHLDRIALLRVAATICRLRKTAGNV 71

Query: 103 IENNLKKGKHRFTRPEVQTNLIGDLLYISVQLVSDTKEGSTLYVATPPGESVALFSTLSM 162
           +ENNL    +  T      + I + L   V +V    + S LYV     ESVA++  L+ 
Sbjct: 72  LENNL---DNEITNEVWTEDTIAECLDGFVMIVD--SDSSILYVT----ESVAMYLGLTQ 122

Query: 163 S 163
           +
Sbjct: 123 T 123


>AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.8 protein.
          Length = 581

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 170 VDALGYRKYEDAKLHGKDIPSLLRINDRAWSGMAQNLASVPDYAPKPILTYNGIDYTN 227
           V+++G+R +      G +     ++  RAW G        P Y P P+  +N  + TN
Sbjct: 500 VESMGFRDHAGLDFKGTNYEMFKKMRFRAWGG--------PPYDPLPVFDWNHTNLTN 549


>AF098992-11|AAC67462.2|  530|Caenorhabditis elegans Hypothetical
           protein F53C3.12 protein.
          Length = 530

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 97  ETLPEVIENNLKKGKHRFTRPEVQTNLIGDLLYI 130
           ETLP +++ +L+ G H+  R E    + G+ +++
Sbjct: 436 ETLPGIVKADLENGDHKVWRRENDKQICGEPIFV 469


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,080,859
Number of Sequences: 27539
Number of extensions: 225926
Number of successful extensions: 551
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 11
length of query: 278
length of database: 12,573,161
effective HSP length: 80
effective length of query: 198
effective length of database: 10,370,041
effective search space: 2053268118
effective search space used: 2053268118
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)