GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001787-TA|BGIBMGA001787-PA|IPR007087|Zinc finger,
C2H2-type
         (518 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochr...    27   0.24 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    27   0.31 
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    25   1.7  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    23   6.8  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   6.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   9.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   9.0  

>AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q2 protein.
          Length = 126

 Score = 27.5 bits (58), Expect = 0.24
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 143 PTSKDIIKPVRIERCIACNVLIKSDDHTCGISFSNVLKSQYSCLGCNQQFNTLHLYELH 201
           PT  D+     +ERCI  ++ +    H    +    +++Q   L        +H+Y+LH
Sbjct: 37  PTYSDLQNLKYLERCIKESLRLYPSVHLISRALGEDVRTQKGYLIPKDTITIIHIYDLH 95


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 27.1 bits (57), Expect = 0.31
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 106 QSEFECPVCSKIFKVYSWAWKHIQKYHCIDEKGN 139
           +  F CP+C+K F       KH++ ++   +KG+
Sbjct: 372 EKRFACPICNKRFMRSDHLAKHVKTHNGNGKKGS 405


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
          protein.
          Length = 46

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 9  LRSQRLTCKCDTCALGFKNVQALRSH 34
          +R+  L CKC  C   F     L+ H
Sbjct: 1  IRTHTLPCKCTICPKAFSRPWLLQGH 26


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 106 QSEFECPVCSKIFKVYSWAWKHIQKY 131
           +  F CPVC + F   S    H++ +
Sbjct: 47  EKPFRCPVCDRRFSQSSSVTTHMRTH 72


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 106 QSEFECPVCSKIFKVYSWAWKHIQKY 131
           +  F CPVC + F   S    H++ +
Sbjct: 303 EKPFRCPVCDRRFSQSSSVTTHMRTH 328


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 356 LEMASLLNDEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEMKTKVPVKTYS 408
           LE ++L ++E   K  C+N  E     S +   E  +KL    K+  P   YS
Sbjct: 320 LEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYKSLGPDSVYS 372


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 356 LEMASLLNDEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEMKTKVPVKTYS 408
           LE ++L ++E   K  C+N  E     S +   E  +KL    K+  P   YS
Sbjct: 212 LEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYKSLGPDSVYS 264


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,886
Number of Sequences: 317
Number of extensions: 4857
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 7
length of query: 518
length of database: 114,650
effective HSP length: 60
effective length of query: 458
effective length of database: 95,630
effective search space: 43798540
effective search space used: 43798540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)