Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001787-TA|BGIBMGA001787-PA|IPR007087|Zinc finger,
C2H2-type
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115... 34 0.31
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 33 0.73
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 33 0.73
08_02_1114 - 24388807-24388932,24390941-24390970,24391044-243911... 31 2.2
03_02_0849 - 11768191-11771412 31 2.9
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 29 6.8
06_03_1478 - 30420097-30420651 29 6.8
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296... 29 6.8
02_05_0202 + 26708049-26709074 29 6.8
04_04_0734 + 27648661-27649596 29 9.0
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 29 9.0
>08_02_1060 +
24007980-24008662,24010078-24010219,24010293-24011537,
24012453-24013040
Length = 885
Score = 33.9 bits (74), Expect = 0.31
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 104 GKQSEFECPVCSKIFKVYSWAWKHI---QKYH 132
GK +FECPVC+K F+ S + H+ KYH
Sbjct: 362 GKDGKFECPVCNKTFEEQSRYFGHVGSHAKYH 393
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 32.7 bits (71), Expect = 0.73
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 104 GKQSEFECPVCSKIFKVYSWAWKHI 128
GK +FECPVC+K F+ S + HI
Sbjct: 356 GKDGKFECPVCNKTFEEQSRYFGHI 380
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 32.7 bits (71), Expect = 0.73
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 186 LGCNQQFNTLHLYELHIAG 204
LGCN +LHLYE+HI+G
Sbjct: 198 LGCNISLTSLHLYEVHISG 216
>08_02_1114 -
24388807-24388932,24390941-24390970,24391044-24391100,
24391231-24391393,24391487-24391614,24391697-24391802,
24391912-24391991,24392118-24392215,24392491-24392631,
24392738-24392822,24393556-24393693
Length = 383
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 52 EVIAKRKLIPHKKVIKVAHKMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDGKQSEFEC 111
+++ KR+ PH+ V+ + + ST K KT P +D + C
Sbjct: 256 QLLGKRRGFPHRTVLPPPVRDFQQYYGCSTVKETQSTSYGSLQKKTSAPKQDSDIGDQTC 315
Query: 112 PVC 114
P+C
Sbjct: 316 PIC 318
>03_02_0849 - 11768191-11771412
Length = 1073
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 197 LYELHIAGLHSEGAEN--LFFPDEAAFSAWRQ-DTEKRCDIKYTTLSKIDNMQIYHCSHM 253
L +LH+ G+HS + L FP + W + + CD + L K+ + I HC +
Sbjct: 810 LKKLHLGGMHSLQSMGTLLGFPSLEVLTLWDMPNLQTWCDSEEAELPKLKELYISHCPRL 869
Query: 254 K 254
+
Sbjct: 870 Q 870
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 29.5 bits (63), Expect = 6.8
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 239 LSKIDNMQIYHCSHMKCDSSTASMCPSSFTKQEFSKGIQVVYYKAHYGHIIDEYTLPEEF 298
++K++ IY ++K D +T +S+ +Q + Y H+++E PE
Sbjct: 73 MAKMNPQGIYVNKNVKLDDLQVYGFDYDYTLSHYSEHLQCLIYDLAKKHLVNELKYPESC 132
Query: 299 KKY 301
KY
Sbjct: 133 LKY 135
>06_03_1478 - 30420097-30420651
Length = 184
Score = 29.5 bits (63), Expect = 6.8
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 18 CDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVIAK 56
CD C F+ QAL H+A +H KK ++ K +AK
Sbjct: 110 CDRCKAPFETRQALGGHRA-SHSTKKGCSWHAKQLAMAK 147
>02_05_0975 +
33227431-33227730,33228556-33228636,33228883-33229680,
33230829-33231005,33231159-33231274,33231422-33231520,
33231598-33232040,33232147-33232184,33232343-33232600,
33233378-33233525,33233989-33234108,33234884-33234984,
33235090-33235213,33235386-33235498,33236103-33236214,
33236298-33236432,33236527-33236593,33236685-33236741,
33236774-33236900,33237221-33237338,33237418-33237929
Length = 1347
Score = 29.5 bits (63), Expect = 6.8
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 349 KLLYGKALEMASLLNDEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEMKTKVPVKTYS 408
KL Y KAL++ L DE + E K + V +E K D E K K V+ S
Sbjct: 304 KLCYNKALQITKCLEDEDALMDQIHQNIETVTKAAK---VLEEMKTD-EQKLKKLVRDTS 359
Query: 409 NTRKNVK 415
N R K
Sbjct: 360 NARGTSK 366
>02_05_0202 + 26708049-26709074
Length = 341
Score = 29.5 bits (63), Expect = 6.8
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 98 PIPSEDGKQSEFECPVCSKIFKVY 121
P+P K++ F+CP C K+F+ Y
Sbjct: 190 PVPE---KRTRFQCPACKKVFRSY 210
>04_04_0734 + 27648661-27649596
Length = 311
Score = 29.1 bits (62), Expect = 9.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 98 PIPSEDGKQSEFECPVCSKIFKVY 121
P + K++ F+CP C K+F+ Y
Sbjct: 163 PAAAAAQKRTRFQCPACKKVFRSY 186
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 29.1 bits (62), Expect = 9.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 13 RLTCKCDTCALGFKNVQALRSHQAVAHPLK 42
R C C C F +L HQA+ H +K
Sbjct: 238 RELCACSQCGEVFNKADSLEHHQAIRHAVK 267
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.132 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,887,819
Number of Sequences: 37544
Number of extensions: 557764
Number of successful extensions: 1398
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1385
Number of HSP's gapped (non-prelim): 17
length of query: 518
length of database: 14,793,348
effective HSP length: 85
effective length of query: 433
effective length of database: 11,602,108
effective search space: 5023712764
effective search space used: 5023712764
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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