GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001787-TA|BGIBMGA001787-PA|IPR007087|Zinc finger,
C2H2-type
         (518 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    26   2.1  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    26   2.1  
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    25   3.7  
AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein p...    25   4.9  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   6.5  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 9   LRSQRLTCKCDTCALGFKNVQALRSHQAVAH 39
           L + +   KCD CA  F+  Q L+ H    H
Sbjct: 376 LHTDQKPYKCDQCAQTFRQKQLLKRHMNYYH 406



 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 8   KLRSQRLTCKCDTCALGFKNVQALRSH 34
           K  S+    KC  C  GFK + +L++H
Sbjct: 147 KTHSEDRPHKCVVCERGFKTLASLQNH 173


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 17  KCDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVIAKRKLIPHKKVIKVAHKMNKTS 76
           K    A GF  V     +  V  P+ K+  +R    + A+RKLI     +K A+     +
Sbjct: 493 KARLVAKGFSQVYGA-DYDEVFAPVAKQTTFRTLLSIAARRKLIVKHVDVKSAYLYGDLA 551

Query: 77  ENASTKK 83
           E    K+
Sbjct: 552 ETIYMKQ 558


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 40  PLKKRIAYRPKTEVIAKRKLIPHKKVIKVAHKMNKTSENASTKKSQPHNLLRKYNTKTPI 99
           P+KK            +R+L+  K   + A K  +  E  S     P    R    +TP 
Sbjct: 136 PIKKMSVSILSALSCIERELLTMKLRAERAEKALR--EVQSEPPETPMTGKRSRKARTPE 193

Query: 100 PSEDGKQSEFECPVCSKIFKVYS 122
            +ED K+++ + P C++    YS
Sbjct: 194 EAEDAKRAKNDAPSCNRPDAEYS 216


>AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein
           protein.
          Length = 492

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 17/81 (20%), Positives = 35/81 (43%)

Query: 37  VAHPLKKRIAYRPKTEVIAKRKLIPHKKVIKVAHKMNKTSENASTKKSQPHNLLRKYNTK 96
           V HP+KK            +R+L+  +   +   K  K +    ++   P N  R  N +
Sbjct: 118 VHHPIKKMAVSILSALACVERELMTTRLRAERTEKSLKEALEGCSQTETPVNGKRGRNLR 177

Query: 97  TPIPSEDGKQSEFECPVCSKI 117
           +   ++D K+++ + P  S +
Sbjct: 178 STEEADDAKRAKNDAPSGSSL 198


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 370 IECQNGKELAKKTSTDDIVEDESKLDTEMKTKVP-VKTYSNTRKNVKFEDNKIGSPKFGS 428
           +  QNG     K S DDI  ++  + T M  ++  V  +SN+R+ +     ++GSP    
Sbjct: 228 VSFQNGYIYLLK-SYDDITPNQ--IHTGMNGELGIVMEWSNSRELLAVAGTELGSPHMTD 284

Query: 429 PASLTSFNDSYRHFVE 444
               T +N+  + + E
Sbjct: 285 IHGATVYNNLLKFYTE 300


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 503,184
Number of Sequences: 2123
Number of extensions: 19278
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 9
length of query: 518
length of database: 516,269
effective HSP length: 67
effective length of query: 451
effective length of database: 374,028
effective search space: 168686628
effective search space used: 168686628
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)