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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001787-TA|BGIBMGA001787-PA|IPR007087|Zinc finger,
C2H2-type
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein ...    36   0.049
At5g26990.1 68418.m03220 drought-responsive family protein non-c...    34   0.26 
At4g26030.1 68417.m03748 hypothetical protein                          33   0.35 
At3g06760.1 68416.m00801 drought-responsive family protein simil...    32   1.1  
At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein ...    31   1.4  
At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein ...    31   1.8  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    31   1.8  
At2g14255.1 68415.m01593 zinc finger (DHHC type) family protein ...    31   2.4  
At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family...    31   2.4  
At3g42440.1 68416.m04395 hypothetical protein several hypothetic...    30   4.3  
At1g56280.2 68414.m06470 drought-responsive family protein conta...    30   4.3  
At1g56280.1 68414.m06469 drought-responsive family protein conta...    30   4.3  
At5g60030.1 68418.m07527 expressed protein                             29   5.6  
At5g51660.1 68418.m06405 cleavage and polyadenylation specificit...    29   5.6  
At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein ...    29   5.6  
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ...    29   5.6  
At3g15420.1 68416.m01956 expressed protein                             29   5.6  
At3g05700.1 68416.m00637 drought-responsive family protein conta...    29   5.6  
At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger) fa...    29   5.6  
At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger) fa...    29   5.6  
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f...    29   5.6  
At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein ...    29   5.6  
At3g52190.1 68416.m05731 transducin family protein / WD-40 repea...    29   7.5  
At3g24730.1 68416.m03105 mitosis DIM1 family protein contains Pf...    29   7.5  
At5g61550.1 68418.m07724 protein kinase family protein contains ...    29   9.9  
At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4) i...    29   9.9  
At3g23140.1 68416.m02916 zinc finger (C2H2 type) family protein ...    29   9.9  
At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP tra...    29   9.9  
At1g06760.1 68414.m00718 histone H1, putative similar to histone...    29   9.9  

>At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 650

 Score = 36.3 bits (80), Expect = 0.049
 Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 5/164 (3%)

Query: 17  KCDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVI-AKRKLIPHKKVIKVAHKMNKT 75
           KC  C   F+  QAL  HQ +  P+K++++ +  +EV   K KL    +     ++    
Sbjct: 44  KCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVC 103

Query: 76  SENASTKKSQPHNLLRKYNTKTPIPSEDGKQSEFECPVCSKIF-KVYSWAWKHIQKY-HC 133
            +     +    +     +TK  + S   + S  +     KI  +  S+     +K+ HC
Sbjct: 104 GKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHC 163

Query: 134 IDEKGNPVLPTSKDIIKPVRIERCIACNVLIKSDDH--TCGISF 175
           ++ K +   P S     P  +   +      KS  H   CG SF
Sbjct: 164 VELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSF 207


>At5g26990.1 68418.m03220 drought-responsive family protein
           non-consensus AT donor splice site at exon 3, AC
           acceptor splice site at exon 4; similar to
           drought-induced mRNA, Di19 [Arabidopsis thaliana]
           gi|469110|emb|CAA55321
          Length = 222

 Score = 33.9 bits (74), Expect = 0.26
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 99  IPSEDGKQSEFECPVCSKIFKVYSWAWKHIQKYHCIDEKGN--PV--LPTSKDIIKPVRI 154
           I  ED  + E+ CP CS  F + S    HI + H +D K    P+  +  S D+I  + +
Sbjct: 34  IEGEDDFREEYACPFCSDYFDIVSLCC-HIDEDHPMDAKNGVCPICAVKVSSDMIAHITL 92

Query: 155 ERCIACNVLIKSDDHTCGI-SFSNVLKSQY 183
           +      V  K      G  S  ++LK ++
Sbjct: 93  QHANMFKVTRKRKSRRGGAQSMLSILKREF 122


>At4g26030.1 68417.m03748 hypothetical protein 
          Length = 220

 Score = 33.5 bits (73), Expect = 0.35
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 19/168 (11%)

Query: 51  TEVIAKR--KLIPHKKVIKVAH---KMNK--TSENASTKKS--QPHNLLRKYNTKTPIPS 101
           T+ IAKR   LIP   ++ V +   ++N+  TS     K +   P++  ++Y T TP P 
Sbjct: 25  TQTIAKRYHALIPTSNMVIVQNDNDRVNRFMTSYPPILKSTVNPPNDFDKQYETFTPKPI 84

Query: 102 EDG-KQSEFECPVCSKIFKVYSWAWKHIQKYHCIDEKGNPVLPTSKDIIKPVRIERCIAC 160
           +    Q ++    C +   ++S + KH  + + + + G  V    K I KP  +   I  
Sbjct: 85  DFFCSQQDY---ACRQHLDIFSSSPKHYHEQY-VHKNGRSV----KYICKPTEVLEEIHD 136

Query: 161 NVLIKSDDHTCGISFSNVLKSQYSCLGCNQQFNTLHLYELHIAGLHSE 208
            +  + D      S      S + CL CN  F+T  +  +H   +HS+
Sbjct: 137 EIDYEKDGGWI-YSLPFEKDSSFICLKCNSLFDTSQMLVVHTELIHSK 183


>At3g06760.1 68416.m00801 drought-responsive family protein similar
           to drought-induced mRNA, Di19 [Arabidopsis thaliana]
           gi|469110|emb|CAA55321
          Length = 217

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 75  TSENASTKKSQPHNLLRKYNTKTPIPSEDGKQSEFECPVCSKIFKVYSWAWKHIQKYHCI 134
           +S ++S+++ Q  + L        +  ED  ++EF CP C++ F +      HI + H +
Sbjct: 13  SSSSSSSRRCQSRSDLYLGGGYEDLEGEDDLKAEFICPFCAEDFDIVGLCC-HIDEEHPV 71

Query: 135 DEKGNPVLP 143
           + K N V P
Sbjct: 72  EAK-NGVCP 79


>At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 314

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 17  KCDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVI 54
           KC+TC   FK+ QAL  H+A +H  KK  A   KTE +
Sbjct: 195 KCETCGKVFKSYQALGGHRA-SH--KKNKACMTKTEQV 229


>At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 288

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 17  KCDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVIAKRKLIPHKKVIKVAHKMNK 74
           KC+TC   FK+ QAL  H+A +H  KK      KTE   +R    +  V+ VA ++++
Sbjct: 174 KCETCGKVFKSYQALGGHRA-SH--KKNRVSNNKTE---QRSETEYDNVVVVAKRIHE 225


>At1g79280.1 68414.m09242 expressed protein weak similarity to
            Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 339  KSLHVKENVLKLLYGKALEMASLLNDEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEM 398
            K +H   N+ K  Y K  +  S  N     ++E +  +E  K+T+TD +VE   K   E 
Sbjct: 1458 KKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLE-EAKEEAGKRTTTDAVVEQSVKEREEK 1516

Query: 399  KTKVPV 404
            + ++ +
Sbjct: 1517 EKRIQI 1522


>At2g14255.1 68415.m01593 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain;
           low similarity to SP:Q96GR4 Zinc finger DHHC domain
           containing protein 12 (Zinc finger protein 400) {Homo
           sapiens}
          Length = 288

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 137 KGN--PVLPTSKDIIKPVRIERCIACNVLIKSDDHTC 171
           KGN   + PT K II+PVR + C  C   ++  DH C
Sbjct: 110 KGNWSQLCPTCK-IIRPVRSKHCPTCKRCVEQFDHHC 145


>At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family
           protein
          Length = 558

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 337 LGKSLHVKENVLKLLYGKALEMASLLNDEAGCKIECQNGKELAKKTSTDDIVEDESKLDT 396
           L + L V E+++K L  + L + + L +     +E     EL  +  + D+V  E+K+ +
Sbjct: 121 LEEKLVVNESLIKDLQLQVLNLKTELEEARNSNVEL----ELNNRKLSQDLVSAEAKISS 176

Query: 397 EMKTKVPVKTYSNTR-KNV-KFEDNKIGSPKFGSPASLTS 434
                 P K + N+R K++ +   +K+  PK     ++ S
Sbjct: 177 LSSNDKPAKEHQNSRFKDIQRLIASKLEQPKVKKEVAVES 216


>At3g42440.1 68416.m04395 hypothetical protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 136

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 349 KLLYGKALEMASLLNDEAGCKIECQNGKELAKKTSTDDIVEDESK-LDTEMKTKV--PVK 405
           KL+Y  + E+  +L DE G ++E    +  A     + + E E K L T +  K+  P++
Sbjct: 29  KLVYPNSYEICCILVDETGDQMEATIDRRYA-AVYLESMQEKELKRLTTFIVRKIISPIR 87

Query: 406 TYSNTRKNVKFEDNKIGSPKFGSPASLTSFNDSYRHFVEDT 446
           + SN    + F DN + +P       L     S+ + +ED+
Sbjct: 88  STSNL-YGIWFMDNTVVTPDETRETVLFKNLTSFDYILEDS 127


>At1g56280.2 68414.m06470 drought-responsive family protein contains
           an AT-AC intron 3, potentially contains a frameshift. An
           alternate model provides a translation more consistent
           with homologous proteins but lacks the AT-AC intron;
           similar to drought-induced mRNA, Di19 [Arabidopsis
           thaliana] gi|469110|emb|CAA55321
          Length = 112

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 99  IPSEDGKQSEFECPVCSKIFKVYSWAWKHIQKYHCIDEKGNPVLP 143
           I  +D  Q EF CP C++ + +      HI   H ++ K N V P
Sbjct: 25  IDGDDDFQEEFACPFCAESYDIIGLCC-HIDDEHTLESK-NAVCP 67


>At1g56280.1 68414.m06469 drought-responsive family protein contains
           an AT-AC intron 3, potentially contains a frameshift. An
           alternate model provides a translation more consistent
           with homologous proteins but lacks the AT-AC intron;
           similar to drought-induced mRNA, Di19 [Arabidopsis
           thaliana] gi|469110|emb|CAA55321
          Length = 200

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 99  IPSEDGKQSEFECPVCSKIFKVYSWAWKHIQKYHCIDEKGNPVLP 143
           I  +D  Q EF CP C++ + +      HI   H ++ K N V P
Sbjct: 25  IDGDDDFQEEFACPFCAESYDIIGLCC-HIDDEHTLESK-NAVCP 67


>At5g60030.1 68418.m07527 expressed protein
          Length = 292

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 362 LNDEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEMKTKVPVKTYSNTRKNVKFEDNK 420
           L DE       +  K+ +KK + +D+V+++ KL+ E K+    +   N  ++V  E  K
Sbjct: 173 LEDEQKSADRKERKKKKSKKNNDEDVVDEKEKLEDEQKSAEIKEKKKNKDEDVVDEKEK 231


>At5g51660.1 68418.m06405 cleavage and polyadenylation specificity
           factor (CPSF) A subunit C-terminal domain-containing
           protein similar to SP|Q9EPU4 Cleavage and
           polyadenylation specificity factor, 160 kDa subunit
           (CPSF 160 kDa subunit) {Mus musculus}; contains Pfam
           profile PF03178: CPSF A subunit region
          Length = 1442

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 233 DIKYTTLSKIDNMQIYHCS-HMKCDSSTA---SMCPSSFTKQEFS--KGIQVVYYKAHYG 286
           D   T +SK  N ++  CS H K  +      S+ P   T+ E    KGI  VY+K+  G
Sbjct: 529 DANATGVSKQSNYELVCCSGHGKNGALCVLRQSIRPEMITEVELPGCKGIWTVYHKSSRG 588

Query: 287 HIIDEYTL---PEEFKKYSISSL 306
           H  D   +    +E+  Y I SL
Sbjct: 589 HNADSSKMAADEDEYHAYLIISL 611


>At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 427

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 16  CKCDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVIAKRK-LIPHKKVIKVAHKMNK 74
           C  + C L FK  +A   H    H       +  KT++  KR+  +  + V K+ H+ +K
Sbjct: 211 CLVEGCGLKFKTYKARHRHLIDKHKFPTTFEFFKKTQLSKKRREKLQRQHVSKLKHEEDK 270

Query: 75  TSENA 79
            + ++
Sbjct: 271 EAASS 275


>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 452

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 17  KCDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVIAKRKLIPHKKVIKVAHKMNKTS 76
           KCD C+  +      ++H  +     K       T    +   I H+       + N  S
Sbjct: 140 KCDKCSKKYAVQSDWKAHSKICGT--KEYKCDCGTLFSRRDSFITHRAFCDALAEENARS 197

Query: 77  ENASTKKSQPHNLLRKYNTKTPIPS 101
            ++ +KK  P  L RK     P+P+
Sbjct: 198 HHSQSKKQNPEILTRKNPVPNPVPA 222


>At3g15420.1 68416.m01956 expressed protein
          Length = 107

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 45 IAYRPKTEVIAKRKLIPHKKVIKVAHKMNK 74
          +A+  K EV A    +PHKK+I+   K++K
Sbjct: 57 LAFSEKEEVSASENQMPHKKIIEPVAKLHK 86


>At3g05700.1 68416.m00637 drought-responsive family protein contains
           similarity to drought-induced mRNA, Di19 [Arabidopsis
           thaliana] gi|469110|emb|CAA55321
          Length = 181

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 99  IPSEDGKQSEFECPVCSKIFKVYSWAWKHIQKYHCIDEKGNPVLP 143
           I  E+  + EF CP CS  F + S    HI + H ++ K N V P
Sbjct: 34  IDGEEEFREEFACPFCSDYFDIVSLCC-HIDEDHPMEAK-NGVCP 76


>At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 162

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 66  IKVAHKMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDG-----KQSEFECPVCSKIFK 119
           + V+ + + TSE+   +  QP + L ++  +TP    +      KQ++ EC VC   F+
Sbjct: 53  VTVSSENSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQ 111


>At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 162

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 66  IKVAHKMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDG-----KQSEFECPVCSKIFK 119
           + V+ + + TSE+   +  QP + L ++  +TP    +      KQ++ EC VC   F+
Sbjct: 53  VTVSSENSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQ 111


>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 892

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 197 LYELHIAGLHSEGAENLFFPDEAAFSAWRQDTEKRCDIKYTTLSKIDNMQIYHCSHMKCD 256
           L  +H++ + + G EN   PDE++ S   +DTE   + +  +LS + +   ++   ++ D
Sbjct: 626 LRRVHMSCVVNSGNENGHVPDESSRSILSRDTETEDNDRELSLSLLRDYYSFNLQPLESD 685

Query: 257 SSTASMCPSSFTK 269
           S    + P S TK
Sbjct: 686 S---VVNPGSVTK 695


>At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein
           identical to C2H2 zinc finger protein ZAT1 [Arabidopsis
           thaliana] gi|1418321|emb|CAA67227; contains Pfam domain,
           PF00096: Zinc finger, C2H2 type
          Length = 267

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)

Query: 17  KCDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVIAKRKLIPHKKVIKVAH 70
           +C+TC   FK+ QAL  H+A +H  KK+IA   +T+ +   +L   KK    +H
Sbjct: 161 ECETCEKVFKSYQALGGHRA-SH--KKKIA---ETDQLGSDELKKKKKKSTSSH 208


>At3g52190.1 68416.m05731 transducin family protein / WD-40 repeat
           family protein similar to St12p protein (GI:166878)
           {Arabidopsis thaliana}; contains Pfam profile: PF00400
           WD domain, G-beta repeat
          Length = 398

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 12/73 (16%)

Query: 238 TLSKIDNMQIYHCS---HMKCDSSTASMCPSSFTKQEFSKGIQVVYYKAHYGHIIDEYTL 294
           +++++  M+IYH S   H+    ++   CPS       S         + +G ++ + T+
Sbjct: 279 SVAEVKTMEIYHYSKRLHLGQSIASLEFCPSERVMLTTS---------SEWGEMVTKLTV 329

Query: 295 PEEFKKYSISSLL 307
           P+E+K++ I +LL
Sbjct: 330 PKEWKEWQIYALL 342


>At3g24730.1 68416.m03105 mitosis DIM1 family protein contains Pfam
           domain PF02966: Mitosis protein DIM1
          Length = 151

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 248 YHCSHMKCDSSTASMCP---SSFTKQEFSKGIQVVYYKAHYGHIIDEYTL-PEEFKKYSI 303
           ++  HMK DS TA       +   KQ+F   ++ +Y  A  G +I +  + PE   KY +
Sbjct: 87  FNAHHMKLDSGTADHTKWVGAFHIKQDFIDVVEAIYRGAMKGKMIVQCPIPPERIPKYQL 146


>At5g61550.1 68418.m07724 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain;
           protein kinase 1, PnPK1, Populus nigra, EMBL:AB041503
          Length = 845

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 21/96 (21%), Positives = 42/96 (43%)

Query: 354 KALEMASLLNDEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEMKTKVPVKTYSNTRKN 413
           K  E+     +E+   +E +  +E+AK T++ +    E  +    K K  +   +  R+ 
Sbjct: 390 KLTELNQRRFEESEKLVELKEKEEVAKDTASKEKQRYEEAMKEAEKVKELMMKEALHRRE 449

Query: 414 VKFEDNKIGSPKFGSPASLTSFNDSYRHFVEDTLGA 449
            +F+  +    K    ASL S    Y+H+  + + A
Sbjct: 450 AEFKAERDAREKDKLQASLVSPGVQYQHYTWEEIAA 485


>At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4)
           identical to SUVH4 [Arabidopsis thaliana] GI:13517749;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH4 (SUVH4) GI:13517748
          Length = 624

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 387 IVEDESKLDTEMKTKVPVKTYSNTRKNVKFEDNKIGSPKFGSPASLTS 434
           +V++  KL ++ K+++ V    +T  + K E+N  GSPK  SP  LT+
Sbjct: 36  LVQERVKLLSDRKSEICV---DDTELHEKEEENVDGSPKRRSPPKLTA 80


>At3g23140.1 68416.m02916 zinc finger (C2H2 type) family protein
          contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 172

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 13 RLTCKCDTCALGFKNVQALRSHQAVAHPLKKR 44
          R T  CD C  GF N QAL  H  +    ++R
Sbjct: 18 RRTYDCDICKRGFTNPQALGGHNNIHRRERER 49


>At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP
           transferase 2 (IPT2) identical to tRNA
           isopentenyltransferase (IPT2) [Arabidopsis thaliana]
           GI:14279058; identical to cDNA tRNA isopentenyl
           transferase GI:12383201;
          Length = 466

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 115 SKIFKVYSWAWKHIQKYHCIDEKGNPVLPTSKDIIKPV-RIERCIACNVLIKSDDHTCGI 173
           S++  V+ W   +I     I  K       +  ++KP   I RC          D T G 
Sbjct: 350 SRLETVFGWNIHYIDATEYILSKSEE--SWNAQVVKPASEIIRCFLETETESGRDPTSGK 407

Query: 174 SFSNVLKSQYSCLGC-NQQFNTLHLYELHIAG 204
           S    L +QY C  C N+     H +E H  G
Sbjct: 408 SIERDLWTQYVCEACGNKILRGRHEWEHHKQG 439


>At1g06760.1 68414.m00718 histone H1, putative similar to histone
           H1-1 GB:CAA44312 GI:16314 from [Arabidopsis thaliana];
           identical to cDNA H1-1C mRNA for histone H1-1 (partial)
           GI:732560
          Length = 274

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 37  VAHPLKKRIAYRPKTEVIAKRKLIPHKKVIK 67
           V  P KK +A   K   +A +K  P KKV+K
Sbjct: 227 VTSPAKKAVAATKKVATVATKKKTPVKKVVK 257


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,906,045
Number of Sequences: 28952
Number of extensions: 503435
Number of successful extensions: 1580
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1560
Number of HSP's gapped (non-prelim): 42
length of query: 518
length of database: 12,070,560
effective HSP length: 84
effective length of query: 434
effective length of database: 9,638,592
effective search space: 4183148928
effective search space used: 4183148928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)

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