GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001786-TA|BGIBMGA001786-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (138 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 22   FNVDGTYCLSCGADKKIKLWNPHRDL-MLKTYGGHANEVLDAAGSCDSSHIVSASVDKSV 80
            FNVD  Y  +CG  ++I +    R    LK   G  + + D        + +  +  K+V
Sbjct: 1269 FNVDIRYGKNCGKGERIDMNGKLRQSPRLKELVGATSIIKDCVEDMKRGNKILRTCQKAV 1328

Query: 81   IL 82
            +L
Sbjct: 1329 VL 1330


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 67  DSSHIVSASVDKSVILWDVTTAQPLRRYRHHASS 100
           ++S +V  + D+S  L  V  A P   YR +A +
Sbjct: 242 ENSGVVHVAQDESTSLVCVAQACPTPEYRWYAQT 275


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 67  DSSHIVSASVDKSVILWDVTTAQPLRRYRHHASS 100
           ++S +V  + D+S  L  V  A P   YR +A +
Sbjct: 242 ENSGVVHVAQDESTSLVCVAQACPTPEYRWYAQT 275


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.129    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,269
Number of Sequences: 429
Number of extensions: 1394
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 138
length of database: 140,377
effective HSP length: 52
effective length of query: 86
effective length of database: 118,069
effective search space: 10153934
effective search space used: 10153934
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)