GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001784-TA|BGIBMGA001784-PA|IPR007087|Zinc finger,
C2H2-type, IPR012934|Zinc finger, AD-type
         (531 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    24   2.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   9.2  

>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 169 KLKRNREKFSECFLNEVSYATSGTRNRKDLQSVLVKDEVK-NEKSGSDIR 217
           K +R  + + EC L       SG   +KD+   L  +  K N+K    IR
Sbjct: 33  KSERLMKSYFECLLGTGKCTPSGEELKKDIPDALKNECAKCNDKHKEGIR 82


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 10/57 (17%), Positives = 27/57 (47%)

Query: 139 FIGYVEREQEDALVNVRSVSKRKSKQWTRKKLKRNREKFSECFLNEVSYATSGTRNR 195
           F  YV +++   L    ++++R+ K W + +  +N++        + +   + T N+
Sbjct: 264 FNAYVSKQKRWELARNLNLTERQVKIWFQNRRMKNKKNSQRQAAQQQNNNNAATNNQ 320


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.130    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,223
Number of Sequences: 317
Number of extensions: 5056
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 531
length of database: 114,650
effective HSP length: 60
effective length of query: 471
effective length of database: 95,630
effective search space: 45041730
effective search space used: 45041730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)