GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001783-TA|BGIBMGA001783-PA|undefined
         (324 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.6  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   4.8  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   4.8  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   6.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   8.3  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 197 ETANEDDIFTGCLLNEVPYTTSDICNQTDLDLELFVKDEVKSEHSDSDNDISDECPID 254
           E+   D      ++  + +TT D+    ++   L V  E++    D  N+ + +C I+
Sbjct: 137 ESYPHDTQICSMMIESLSHTTQDLVFIWNMTDPLVVNPEIELPQLDISNNYTTDCTIE 194


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 14/39 (35%), Positives = 17/39 (43%)

Query: 183 VAEKNGLSESEGDSETANEDDIFTGCLLNEVPYTTSDIC 221
           VAE      SE  +  A  DD+  G L+NE   T    C
Sbjct: 38  VAEDKARCMSEHGTTQAQIDDVDKGNLVNEPSITCYMYC 76


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 14/39 (35%), Positives = 17/39 (43%)

Query: 183 VAEKNGLSESEGDSETANEDDIFTGCLLNEVPYTTSDIC 221
           VAE      SE  +  A  DD+  G L+NE   T    C
Sbjct: 38  VAEDKARCMSEHGTTQAQIDDVDKGNLVNEPSITCYMYC 76


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 49  LSRLEISQNEYIEILPNVDCSGSPNVSADLK 79
           L +  I QN+ I++   V+ +   N+S D+K
Sbjct: 83  LEKSHIIQNDEIQLDKLVEMANRKNISIDVK 113


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/54 (20%), Positives = 23/54 (42%)

Query: 236 VKSEHSDSDNDISDECPIDADLAFDVAEKNGLSESEGDIETAFEDDKIQNMDDE 289
           ++    D D +  +E  +       V   N   E+ G+++   +DD   + DD+
Sbjct: 351 IERPKKDEDEEEEEEVVVVGRNGAGVGAMNANGEAVGEVDEDDDDDGDDDDDDD 404


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 241 SDSDNDISDECPIDADLAFDVAEKNGLSESEGDIETAFEDDKIQNMDDEGD 291
           SDSD +   +   D D+     EK+ L   +        + K +N +DE D
Sbjct: 172 SDSDVESYKQIKSDLDVLRQSVEKSELWVYKSKASEEHGNKKKKNKEDEDD 222


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.130    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,916
Number of Sequences: 429
Number of extensions: 3792
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 324
length of database: 140,377
effective HSP length: 58
effective length of query: 266
effective length of database: 115,495
effective search space: 30721670
effective search space used: 30721670
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 44 (21.8 bits)