GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001782-TA|BGIBMGA001782-PA|undefined
         (87 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.31 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   0.41 
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   0.72 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   0.72 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   0.96 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   1.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   1.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   2.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   3.9  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    20   5.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    20   5.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   5.1  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    20   5.1  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    20   5.1  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    20   5.1  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    20   5.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   5.1  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    20   5.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   5.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    19   6.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     19   8.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 0.31
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 46  KDNTKVSRLSHLKITKNMSIAIPPRNSRISLNEKVSVD 83
           +D  K+  L H +   ++  +   ++SRI   EK+S D
Sbjct: 649 EDMEKLMMLKHREFRSSIKASDKLKDSRIKTTEKLSTD 686


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 0.41
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 40  DNETA-FKDNTKVSRLSHLKITKNMSIAIPPRN 71
           +NETA  KD+  V   +  ++ K+ SI  PP+N
Sbjct: 285 ENETAHIKDSLIVLTSALQEMNKSKSITEPPKN 317


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
          determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 0.72
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 24 IPSEKKSSDKFRGSKG-DNETAFKDNTKVSRLSH 56
          I S     +KF+  +  DNE   +  TK  RL H
Sbjct: 5  ISSYSHHDEKFKQLRNEDNEIDLRSRTKEERLQH 38


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 0.72
 Identities = 9/40 (22%), Positives = 22/40 (55%)

Query: 47  DNTKVSRLSHLKITKNMSIAIPPRNSRISLNEKVSVDNPI 86
           D  ++  + HL  + N+S+  PP    ++L+   S+++ +
Sbjct: 225 DGFRIDAVPHLFESANISLDEPPLGKNLNLSLHASLNHTL 264


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 0.96
 Identities = 14/68 (20%), Positives = 33/68 (48%)

Query: 12  SDDSGEEMGFNPIPSEKKSSDKFRGSKGDNETAFKDNTKVSRLSHLKITKNMSIAIPPRN 71
           ++DS  +   +P+ S  + + K R    +N+ A ++NT  S    ++  + +       N
Sbjct: 91  TEDSSRKQTIDPLSSNTQITRKRRVGIVENQYAVENNTGSSLCDLVQGLERLFDEKNAGN 150

Query: 72  SRISLNEK 79
           ++I++  K
Sbjct: 151 NKITMKSK 158


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 46  KDNTKVSRLS-HLKITKNMSI--AIPPRNSRISLNEKVSVDNPI 86
           K   K++ LS H K    MS     P    RI+LN K  +D P+
Sbjct: 431 KPKLKIADLSAHDKQAVRMSALNVQPTSKGRITLNSKDPLDPPV 474


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 43  TAFKDNTKVSRLSHLKITKNMSIAIPPRNSRI 74
           T  KDN ++     L   K  S+ +  +N R+
Sbjct: 412 TTEKDNNEIVTAQFLNQLKKSSVLVHTKNGRL 443


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 25  PSEKKSSDKFRGSKGDNETAFKD 47
           P+E K +DK +  K +  T F+D
Sbjct: 477 PNELKPNDKSQVIKQNTWTVFRD 499


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 8   DPDFSDDSGEEM-GFNPIPSEKKSSDKFRGSKGDNETAFKDN 48
           D D  DD  +++   N  P+E   +D F   + D   A+  N
Sbjct: 394 DDDGDDDDDDDVEAANGKPAEGMLTDVFHVQETDKYDAYYGN 435


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
          determiner protein.
          Length = 397

 Score = 19.8 bits (39), Expect = 5.1
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 32 DKFRGSKG-DNETAFKDNTKVSRLSH 56
          +KF+  +  DN+   +  TK  RL H
Sbjct: 13 EKFKQLRNEDNKIDLRSRTKEERLQH 38


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
          determiner protein.
          Length = 408

 Score = 19.8 bits (39), Expect = 5.1
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 32 DKFRGSKG-DNETAFKDNTKVSRLSH 56
          +KF+  +  DN+   +  TK  RL H
Sbjct: 13 EKFKQLRNEDNKIDLRSRTKEERLQH 38


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
          determiner protein.
          Length = 426

 Score = 19.8 bits (39), Expect = 5.1
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 32 DKFRGSKG-DNETAFKDNTKVSRLSH 56
          +KF+  +  DN+   +  TK  RL H
Sbjct: 13 EKFKQLRNEDNKIDLRSRTKEERLQH 38


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
          determiner protein.
          Length = 396

 Score = 19.8 bits (39), Expect = 5.1
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 32 DKFRGSKG-DNETAFKDNTKVSRLSH 56
          +KF+  +  DN+   +  TK  RL H
Sbjct: 13 EKFKQLRNEDNKIDLRSRTKEERLQH 38


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
          determiner protein.
          Length = 407

 Score = 19.8 bits (39), Expect = 5.1
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 32 DKFRGSKG-DNETAFKDNTKVSRLSH 56
          +KF+  +  DN+   +  TK  RL H
Sbjct: 13 EKFKQLRNEDNKIDLRSRTKEERLQH 38


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
          determiner protein.
          Length = 407

 Score = 19.8 bits (39), Expect = 5.1
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 32 DKFRGSKG-DNETAFKDNTKVSRLSH 56
          +KF+  +  DN+   +  TK  RL H
Sbjct: 13 EKFKQLRNEDNKIDLRSRTKEERLQH 38


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
          determiner protein.
          Length = 396

 Score = 19.8 bits (39), Expect = 5.1
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 32 DKFRGSKG-DNETAFKDNTKVSRLSH 56
          +KF+  +  DN+   +  TK  RL H
Sbjct: 13 EKFKQLRNEDNKIDLRSRTKEERLQH 38


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
          determiner protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 5.1
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 32 DKFRGSKG-DNETAFKDNTKVSRLSH 56
          +KF+  +  DN+   +  TK  RL H
Sbjct: 13 EKFKQLRNEDNKIDLRSRTKEERLQH 38


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
          determiner protein.
          Length = 410

 Score = 19.8 bits (39), Expect = 5.1
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 32 DKFRGSKG-DNETAFKDNTKVSRLSH 56
          +KF+  +  DN+   +  TK  RL H
Sbjct: 13 EKFKQLRNEDNKIDLRSRTKEERLQH 38


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 5.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 28  KKSSDKFRGSKGDNETAFKDNTKVSRLS 55
           KKS D  +  + D   ++K N K  + S
Sbjct: 127 KKSLDDVKILRNDRIDSYKSNLKCDKCS 154


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 48  NTKVSRLSHLKITKNMSIAIPPRNSRISLNEKV 80
           N   S LSH       S+ IP  NS +  N K+
Sbjct: 537 NVVGSGLSHGNWIYPASMTIPGSNSAVFTNYKL 569


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 19.0 bits (37), Expect = 8.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 39  GDNETAFKDNTKVSRLSHLKITKN 62
           G+N T FK++       H++ T N
Sbjct: 160 GNNITNFKNSNIFQLKQHMRDTMN 183


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,234
Number of Sequences: 429
Number of extensions: 898
Number of successful extensions: 21
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of query: 87
length of database: 140,377
effective HSP length: 48
effective length of query: 39
effective length of database: 119,785
effective search space:  4671615
effective search space used:  4671615
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.5 bits)
S2: 37 (19.0 bits)