Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001782-TA|BGIBMGA001782-PA|undefined
(87 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17060.1 68417.m02572 expressed protein 31 0.071
At5g48310.1 68418.m05968 expressed protein 30 0.16
At5g58000.1 68418.m07256 phosphatase-related weak similarity to ... 28 0.88
At5g04410.1 68418.m00433 no apical meristem (NAM) family protein... 27 2.0
At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein ... 27 2.0
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 27 2.0
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-... 26 2.7
At1g66780.1 68414.m07591 MATE efflux family protein contains TIG... 26 2.7
At5g58690.1 68418.m07353 phosphoinositide-specific phospholipase... 26 3.5
At2g25480.1 68415.m03051 expressed protein 26 3.5
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta... 26 3.5
At1g27720.1 68414.m03388 transcription initiation factor IID (TF... 26 3.5
At4g32330.2 68417.m04600 expressed protein 25 4.7
At4g32330.1 68417.m04599 expressed protein 25 4.7
At3g59740.1 68416.m06665 receptor lectin kinase 3 (lecRK3) ident... 25 4.7
At3g56680.1 68416.m06305 expressed protein 25 4.7
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 25 4.7
At1g19980.1 68414.m02503 cytomatrix protein-related contains wea... 25 4.7
At1g57906.1 68414.m06568 hypothetical protein 25 6.2
At5g52310.1 68418.m06492 low-temperature-responsive protein 78 (... 25 8.2
At4g00920.1 68417.m00125 COP1-interacting protein-related simila... 25 8.2
At3g19090.1 68416.m02426 RNA-binding protein, putative similar t... 25 8.2
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 25 8.2
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 25 8.2
>At4g17060.1 68417.m02572 expressed protein
Length = 310
Score = 31.5 bits (68), Expect = 0.071
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 2 SDDCVMDPDFSDDSGEEMGFNPIPSEKKSSDKFRG 36
S D D +F DD E GFNP +SS + G
Sbjct: 165 SQDLDYDDEFDDDRAEREGFNPRIQSSRSSSRVNG 199
>At5g48310.1 68418.m05968 expressed protein
Length = 1156
Score = 30.3 bits (65), Expect = 0.16
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 2 SDDCVMDPDFSDDS-GEEMGFNPIPSEKKSSDKFRGSKGDNETAF--KDNTKVSRLSHLK 58
S+D + SD G E+ F+ E + ++ G + D E F K N+K++R LK
Sbjct: 48 SNDNMSIESVSDTGEGNELLFSDYDVEDEEEEEVIGRRYDEEEVFGDKSNSKLNR-GMLK 106
Query: 59 ITKNMSIAIPPRNSRIS 75
KN+ I +P N R++
Sbjct: 107 -DKNLRIEVPFMNRRVT 122
>At5g58000.1 68418.m07256 phosphatase-related weak similarity to CTD
phosphatase-like 3 [Arabidopsis thaliana] GI:22212705;
contains Pfam profiles PF02453: Reticulon, PF00533:
BRCA1 C Terminus (BRCT) domain, PF03031: NLI interacting
factor
Length = 1011
Score = 27.9 bits (59), Expect = 0.88
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 50 KVSRLSHLKITKNMSIAIPPRNSRISLNEKVSVD 83
++ R + LK+TK SI PP R SL+ S D
Sbjct: 87 EIVRANSLKVTKPRSIGTPPMTPRRSLSSSDSND 120
>At5g04410.1 68418.m00433 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) protein;
supporting cDNA gi|6456750|gb|AF201456.1|AF201456
Length = 567
Score = 26.6 bits (56), Expect = 2.0
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 17 EEMGFNPIPSEKKSSDKFRGSKGDNETAFKDNTKVSRLSHLKITKNMSIAIPPRNS 72
E G EK+S + GS +T FKD + LK T +M AIP +S
Sbjct: 409 EVAGGKEAVEEKESGE---GSSSKQDTDFKDFDSAPKYPFLKKTSHMLGAIPTPSS 461
>At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 253
Score = 26.6 bits (56), Expect = 2.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 10 DFSDDSGEEMGFNPIPSEKKSSDKFRGSKGDNETAFKDNTKVS 52
DFS +G+E +P ++ K ++ GDN T DN +S
Sbjct: 47 DFSITTGQEDYTDPYQTKNKEEEEEEDQTGDNST---DNNSIS 86
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 26.6 bits (56), Expect = 2.0
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 5 CVMDPDFSDDSGEEMGFNPIPSE----KKSSDKFRGSK 38
C + FSD G M FNP+ + K DK SK
Sbjct: 130 CSISSSFSDPDGNMMAFNPVNCDVDTVSKQDDKIIDSK 167
>At5g53430.1 68418.m06640 PHD finger family protein / SET
domain-containing protein (TX5) contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain; identical
to cDNA trithorax 5 (TX5) partial cds GI:16118406
Length = 1043
Score = 26.2 bits (55), Expect = 2.7
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 27 EKKSSDKFRGSKGDNETAFKDNTKVSRLSHLKITKNMSIAIPPRNSRIS 75
+ KSS + R + + E K+ KVS LKI K PRN + S
Sbjct: 124 DNKSSGEEREEEIEEEACRKEKVKVSSNHSLKI-KQQETKFTPRNYKYS 171
>At1g66780.1 68414.m07591 MATE efflux family protein contains
TIGRfam profile: TIGR00797: MATE efflux family protein,
Pfam profile PF01554: Uncharacterized membrane protein
family
Length = 485
Score = 26.2 bits (55), Expect = 2.7
Identities = 8/36 (22%), Positives = 23/36 (63%)
Query: 18 EMGFNPIPSEKKSSDKFRGSKGDNETAFKDNTKVSR 53
E GF+ +P E++ + + K +++T++ +T++ +
Sbjct: 2 ENGFSLVPKEEEEEEDYSNEKSEDQTSYYLSTEMMK 37
>At5g58690.1 68418.m07353 phosphoinositide-specific phospholipase C
family protein contains Pfam profile: PF00388
phosphatidylinositol-specific phospholipase C
Length = 578
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/77 (18%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 8 DPDFSDDSGEEMGFNPIPSEKKSSDKFRGSKGDNETAFKDNTKVSRLSHLKITKNMSIAI 67
D D D+ + + ++K+ ++ +K + + ++++ + L++ ++ I I
Sbjct: 265 DKDSESDASGKASSDVSADDEKTEEETSEAKNEEDGFDQESSNLDFLTYSRL-----ITI 319
Query: 68 PPRNSRISLNEKVSVDN 84
P N++ L E +++DN
Sbjct: 320 PSGNAKNGLKEALTIDN 336
>At2g25480.1 68415.m03051 expressed protein
Length = 404
Score = 25.8 bits (54), Expect = 3.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 69 PRNSRISLNEKVSVDNPI 86
PR R+SL+EK DNP+
Sbjct: 288 PRFGRLSLDEKTPKDNPV 305
>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
domain-containing protein / sec63 domain-containing
protein similar to SP|Q9UGP8 Translocation protein SEC63
homolog {Homo sapiens}; contains Pfam profiles PF00226
DnaJ domain, PF02889 Sec63 domain
Length = 702
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 3 DDCVMDPDFSDDSGEEMGFNPIPSEKKSSDKFRGSKGDN 41
+D + + D+ DD E ++ EKK D+ RGSK N
Sbjct: 647 EDEIEEEDYDDDYESE--YSEDEDEKKDMDEKRGSKKAN 683
>At1g27720.1 68414.m03388 transcription initiation factor IID
(TFIID) component TAF4 family protein contains Pfam
profile PF05236: Transcription initiation factor TFIID
component TAF4 family
Length = 682
Score = 25.8 bits (54), Expect = 3.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 17 EEMGFNPIPSEKKSSDKFRGSKGDNETA-FKDNTKVSRLSHLKITKNMSIAIPPRNSRIS 75
E +G + PS KK K G+ D F D T VS ++ + K + + P +N R+S
Sbjct: 411 EALGSSLPPSRKKQ--KICGTSSDESIEKFNDVTAVSGINLREEEKQLLDSGPKKNDRVS 468
>At4g32330.2 68417.m04600 expressed protein
Length = 436
Score = 25.4 bits (53), Expect = 4.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 69 PRNSRISLNEKVSVDNP 85
PR R+SL+E+ S DNP
Sbjct: 308 PRLGRLSLDERASKDNP 324
>At4g32330.1 68417.m04599 expressed protein
Length = 437
Score = 25.4 bits (53), Expect = 4.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 69 PRNSRISLNEKVSVDNP 85
PR R+SL+E+ S DNP
Sbjct: 309 PRLGRLSLDERASKDNP 325
>At3g59740.1 68416.m06665 receptor lectin kinase 3 (lecRK3)
identical to receptor lectin kinase 3 [Arabidopsis
thaliana] gi|4100060|gb|AAD00733
Length = 659
Score = 25.4 bits (53), Expect = 4.7
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 14/91 (15%)
Query: 4 DCVMDPDFSDDSGEEMGFNPIPSEKKSSDKFRGSKGDNETAFKD----NTKVSRLS---- 55
D D +F D +G N I + G D + FK +TKV RLS
Sbjct: 127 DIRKDEEFGDIDDNHVGIN-INGLTSVASASAGYYDDEDGNFKKLSLISTKVMRLSIVYS 185
Query: 56 HLKITKNMS-----IAIPPRNSRISLNEKVS 81
H N++ I++PP+ S +SLN +S
Sbjct: 186 HTDKQLNVTLLPAEISVPPQKSLLSLNRDLS 216
>At3g56680.1 68416.m06305 expressed protein
Length = 353
Score = 25.4 bits (53), Expect = 4.7
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 41 NETAFKDNTKVSRLSHLKITKNMSIAIPPRNSRISL 76
N + +D+ +VS+ +++++ KN+SI SR+++
Sbjct: 196 NASLSRDDKQVSKNAYVEVKKNLSIRESGPTSRVAI 231
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis
thaliana] GI:11993471; contains Pfam profile PF00917:
MATH domain
Length = 1663
Score = 25.4 bits (53), Expect = 4.7
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 12 SDDSGEEMGFNPIPSEKKSSDKFRGSKGDNETAFKDNTKVSRLS-HLKITKNMSIAIPPR 70
SDD + + +P E S++ G GD E F+D +SR HL +N P
Sbjct: 698 SDDDQDALTTDP--DEIIDSEESEGISGDEEDTFRD--FLSRAGFHLTFGEN------PS 747
Query: 71 NSRISLNEKVSVD 83
+++L EK+ +D
Sbjct: 748 QPQVTLREKLLMD 760
>At1g19980.1 68414.m02503 cytomatrix protein-related contains weak
similarity to CAST1 [Rattus norvegicus]
gi|22138113|gb|AAL07517
Length = 342
Score = 25.4 bits (53), Expect = 4.7
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 13 DDSGEEMGFNPIPS-----EKKSSDKFRGS----KGDNETAFKDNTKVSRLSHLKITKNM 63
+ + + GF P+ + EK+S+ GS K D A N KVS+ S K KNM
Sbjct: 254 ESAKKSRGFTPVLTRCTKLEKRSNGNTVGSHISTKKDKSAASTTNEKVSKSSKRKRAKNM 313
Query: 64 S 64
+
Sbjct: 314 T 314
>At1g57906.1 68414.m06568 hypothetical protein
Length = 228
Score = 25.0 bits (52), Expect = 6.2
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 45 FKDNTKVSRLSHLKITKNMSIAIPPRNSRISL----NEKVSVDNPI 86
FK+N + +L + N+ + + PR S + NEK +VD +
Sbjct: 134 FKENVLKRKADYLDLDDNVYVGVAPRISNVIHDDFGNEKCNVDQEV 179
>At5g52310.1 68418.m06492 low-temperature-responsive protein 78
(LTI78) / desiccation-responsive protein 29A (RD29A)
Length = 710
Score = 24.6 bits (51), Expect = 8.2
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 2 SDDCVMDPDFSDDSGEEM--GFNPIPSEKKSSDKFRGSKGDNETAFKDNTKVSRLS 55
SDD ++ + D E F+P S K D+F+ S+ D E + T+ + S
Sbjct: 449 SDDVEVETELGRDPKTETLDQFSPELSHPKERDEFKESRDDFEETRDEKTEEPKQS 504
>At4g00920.1 68417.m00125 COP1-interacting protein-related similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646
Length = 314
Score = 24.6 bits (51), Expect = 8.2
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 23 PIPSEKKSSDKFRGSK-GDNETAFKDNTKVSRLS 55
P+P++KK K G K D++ + K+ T+V+ S
Sbjct: 242 PVPNKKKVGTKNNGGKDADDKASTKEVTEVASSS 275
>At3g19090.1 68416.m02426 RNA-binding protein, putative similar to
RNA-binding protein homolog GB:AAF00075 GI:6449448 from
[Brassica napus]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 455
Score = 24.6 bits (51), Expect = 8.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 24 IPSEKKSSDKFRGSKGDNETAFKDNTK 50
+ +EKK D GS G TAFK N +
Sbjct: 12 VTTEKKRLDGGGGSSGAQATAFKFNAQ 38
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 24.6 bits (51), Expect = 8.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 12 SDDSGEEMGFNPIPSEKKSSDKFRGSKGDNE 42
SDD G+ +G P P + SD+ DN+
Sbjct: 127 SDDEGDMIGPPPPPPAARDSDEDSDDDDDND 157
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 24.6 bits (51), Expect = 8.2
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 1 MSDDCVMDPDFSDDSGEEMGFNPIPSEKKSSDKFRGSK--------GDNETAFKDNTKVS 52
+SD+ + D DD EE+ N S +SS K K G + FK +
Sbjct: 109 ISDEELEGVDDDDDDSEEISSNASTSPSRSSSKKSAKKWLFNCFSAGVKDKDFKYKSSEE 168
Query: 53 RLSHLKITKN 62
+S +K+ N
Sbjct: 169 TMSKVKVKTN 178
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.128 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,889
Number of Sequences: 28952
Number of extensions: 91926
Number of successful extensions: 250
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 24
length of query: 87
length of database: 12,070,560
effective HSP length: 66
effective length of query: 21
effective length of database: 10,159,728
effective search space: 213354288
effective search space used: 213354288
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)
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