Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001781-TA|BGIBMGA001781-PA|IPR012934|Zinc finger,
AD-type
(1137 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 34 0.13
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 33 0.23
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.69
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy... 31 0.69
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 31 0.91
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 30 1.6
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 30 2.1
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 2.8
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 3.7
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 29 3.7
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 29 3.7
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 29 4.9
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 29 4.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 4.9
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 28 6.4
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 28 6.4
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 28 8.5
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni... 28 8.5
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 28 8.5
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 33.9 bits (74), Expect = 0.13
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 488 DEDKNENSGRVNQDLISSVDHQQQDALVNVRSVPKRNSQHRSPKKLKTNSMKSLDK-NKF 546
D+ E+S + + L+ ++ + + +N + K N + L S KS K +
Sbjct: 289 DDIHEESSDTLEEPLL--INELNRTSFLNSNNNLKLNEAEENQNLLNLRSPKSSGKADNL 346
Query: 547 TACFISDLPCVVTRRIKKRKNLQRAFVQVDDKNENSGRGEYSNS 590
T S++ V + + NLQ F + + N GR EYSNS
Sbjct: 347 TIKSSSNIDKVTSNDLYLDNNLQSHFKVTESQPTNLGRKEYSNS 390
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 33.1 bits (72), Expect = 0.23
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 745 TEVSSPPRSKITNNKPTAISSNADCSG-----SPKASVDLK-DIAKNEVNQDLTSSVDHQ 798
T + P++++T N +++SSN + KA+V D+ K +V +S VD+
Sbjct: 456 TTLQQLPKARVTPNVLSSLSSNLGKTNPTSVYQSKANVTTSADVEKPQVKVATSSRVDYD 515
Query: 799 QQDALVNARSVPKRNSQHRSPKKLKTNNIQIS 830
+ + KR + R +KLK +Q++
Sbjct: 516 LKSPNQRTANAKKRLEERRRRRKLKLQELQLN 547
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 31.5 bits (68), Expect = 0.69
Identities = 43/187 (22%), Positives = 67/187 (35%), Gaps = 16/187 (8%)
Query: 728 EDIETAF-EDDDLNEYLQTEVSSPPRSKITNNKPTAISSNADCSGSPKASVDLKDIAKNE 786
EDI EDDDL E + N + TA S+ D S + + D+ + K+
Sbjct: 3921 EDITNTLNEDDDLEE-------------LANEEDTANQSDLDESEARELESDMNGVTKDS 3967
Query: 787 -VNQDLTSSVDHQQQDALVNARSVPKRNSQHRSPKKLKTNNIQISXXXXXXXXXXXXXET 845
V+++ S + + QD +P+ S + K N +
Sbjct: 3968 VVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANN 4027
Query: 846 NGFSGSKEDIETAFEDDDLNEYLQTEVSSPPRSKITNNKPTAISSNADCSGSPKASVDL- 904
SKED A ED D E E S +P +N+ + +DL
Sbjct: 4028 ESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDHLDLP 4087
Query: 905 EDIAKNE 911
ED+ +E
Sbjct: 4088 EDLKLDE 4094
Score = 31.5 bits (68), Expect = 0.69
Identities = 39/195 (20%), Positives = 80/195 (41%), Gaps = 9/195 (4%)
Query: 225 MQNEDINENSTECFLSEVPHETSDICNPTNVQIVSVQDENINENSTECFLNEVTHETSDI 284
+ NE+ N ++ SE SD+ T +VS + + +E + EV D+
Sbjct: 3936 LANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDL 3995
Query: 285 CNPMNPQIVFVQN-EDINGNSTECFLNEVPHETSDICNPTDVQIVFMQNEDINENSTECF 343
N +N ++ N ED+ + + SD+ + D ++++D E E
Sbjct: 3996 SNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKA-LEDKDRQEKEDEEE 4054
Query: 344 LSE---VPHEMSDICNPTNVEIVFVQNEDINENSTECFLNEVLHEMSDICNPTNVEIVFA 400
+S+ + E+ N + +NED + + L+E + D+ +++E +
Sbjct: 4055 MSDDVGIDDEIQPDIQENNSQPP-PENEDHLDLPEDLKLDE---KEGDVSKDSDLEDMDM 4110
Query: 401 QAEDINENSGRVNQD 415
+A D N+ +D
Sbjct: 4111 EAADENKEEADAEKD 4125
>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 211
Score = 31.5 bits (68), Expect = 0.69
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 484 VFVQDEDKNENSGRVNQDLISSVDHQQQDALVNVRSVPKR-NSQHRSPKKLKTNSMKSLD 542
VF Q E K +QD I + +D L+ + N S +KL +S S
Sbjct: 104 VFSQKEQKKLELQ--SQDDIDTGTVVARDELLATEPISLSINPASTSYEKLTVSSPNSFL 161
Query: 543 KNKFTACFISDLPCVVTRRIKKRKNLQRAFVQVDDKNENSGRGE 586
KN+ + F+S P V++ K++ + V+ K GR E
Sbjct: 162 KNQDESLFLSSSPITVSQGTKRKSKNSNSTVKKKKKRARKGRDE 205
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 31.1 bits (67), Expect = 0.91
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 392 PTNVEIVFAQAEDINENSGRVNQDLISSVDHQQQDAVVNAKSVFREKFQRWS-PKKLKTK 450
P VEI Q +DINE + D +++D+ + A + A EK + +
Sbjct: 26 PLRVEITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKT 85
Query: 451 SKISLDKEKFTTCFVDDLPRATSDICNPTNAHSVFVQDEDKN---ENSGRVNQDLISSVD 507
K L E F + + + A +F DE N RV ++L ++D
Sbjct: 86 GKGYLQMEDFVRVMTEKIVE-RDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENID 144
Query: 508 HQQQDALV 515
Q+ +A++
Sbjct: 145 DQELEAMI 152
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 30.3 bits (65), Expect = 1.6
Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 2/164 (1%)
Query: 740 NEYLQTEVSSPPRSKITNNKPTAI-SSNADCSGSPKASVDLKDIAKNEVNQDLTSSVDHQ 798
N LQT VSS S T++ ++ SS++ + + +S + + + +SS
Sbjct: 120 NGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSS 179
Query: 799 QQDALVNARSVPKRNSQHRSPKKLKTNNIQISXXXXXXXXXXXXXETNGFSGSKEDIETA 858
+ ++ S +S S ++++ I+ ++ S S+ ++
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSS 239
Query: 859 F-EDDDLNEYLQTEVSSPPRSKITNNKPTAISSNADCSGSPKAS 901
F + ++ T +P S + + S+ A + KAS
Sbjct: 240 FITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALNASKAS 283
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 1056 EDDDLNEYLQTEVSSPPSLK------ISNNKPTAISSNADCSGSPNASVDLKDKAKNEGK 1109
EDD L + +T SP SLK ++N+ I S A S SP+A L A K
Sbjct: 149 EDDSLT-FSKTSPVSPSSLKDGASNTVTNDASNKIKSEASESASPSALQALDSTAAGSSK 207
Query: 1110 KH 1111
+H
Sbjct: 208 EH 209
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 387 SDICNPTNVEIVFAQAEDINENSGRVNQDLISSVDHQQQDAVVNAKSVFREKFQRWSPKK 446
+D+ P IV A +N G V + SV D+ +A VF + ++ +K
Sbjct: 223 ADVAQPDQARIVALNAAAFLKNEGGV----VISVKASCIDSTADAAVVFAREVKKMQEEK 278
Query: 447 LKTKSKISLDKEKFTTCFV 465
+K + +++L+ + C +
Sbjct: 279 IKPQEQLTLEPYERDHCII 297
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 746 EVSSPPRSKITNNKPTAISSNADCSGSPKASVDLKDIAKNEVNQDLTSSVDHQQQDALVN 805
+V+S + K+ + A+ N + S +ASV KD K + + ++Q A +
Sbjct: 17 QVTSRVQEKLDSKSTNAVEQN---NNSSQASVT-KDNKKKAAKRAKKKAAKKKKQSAAAS 72
Query: 806 ARSVPKRNSQHRSPKKLKTNNIQ 828
A S P +QH ++ + +Q
Sbjct: 73 ASSTPVEEAQHAQEEQQEQTILQ 95
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 483 SVFVQDEDKNENSGRVNQDLISSVDHQQQDALVNVRSVPKRNSQHRSPKKLKTNSMKSLD 542
SV +E++ EN R+ + D +Q + + + VPK + K + +K +
Sbjct: 157 SVTSSEEEEEENGARIEELNSDEEDAEQAEEEILEKPVPKDEVAEKHSK----DKLKKEE 212
Query: 543 KNKFTACFISD 553
K K TA +SD
Sbjct: 213 KEKKTAVDVSD 223
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 131 MRVSVELQTQDYLRISEPCPVIQEFISSVDHQQQD 165
+R L D + SEPCP+ QE SV H++ +
Sbjct: 501 VRSQYVLTPLDPIAASEPCPICQEKFQSVWHEEAE 535
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 1040 VPNKFSGRNGDIETAFEDDDLNEYLQTE----VSSPPSLKISNNKPTAISSNADCSGSPN 1095
+P+KFS + D E DDD N + + + S ++S +P +S++ + S +P
Sbjct: 1 MPSKFSSKYVDTEAISNDDD-NPFATAKSYYSKDTDLSTRVSAGRPRTLSTSMEASAAPT 59
Query: 1096 ASVDLKD-KAKNEGKKHRQ 1113
+LK+ + + +H+Q
Sbjct: 60 IP-ELKNLRRRGSLDEHKQ 77
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 620 IKKRKNLQRAFVQDDDKNENSGRGEYSNSASPLLVHVGVRVRK 662
I R L+R ++Q DD E G+Y + ++ GV ++K
Sbjct: 348 IANRARLEREYLQSDDAEEQEMLGDYVEGQTRVVNENGVTLKK 390
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 562 IKKRKNLQRAFVQVDDKNENSGRGEYSNSASPLLVHVGVRVRK 604
I R L+R ++Q DD E G+Y + ++ GV ++K
Sbjct: 348 IANRARLEREYLQSDDAEEQEMLGDYVEGQTRVVNENGVTLKK 390
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.7 bits (61), Expect = 4.9
Identities = 44/206 (21%), Positives = 86/206 (41%), Gaps = 27/206 (13%)
Query: 725 GSKEDIETAFEDDDLNEYLQTEVSSPPRSKITNNKP--TAISSNADCSGSPKA--SVDL- 779
G + I +FE DD++ + + S R + + +P + + +N S S ++ +D+
Sbjct: 18 GRHDSIRKSFEADDIDVTDENTIFSTSRKEQSTIEPMDSFVENNIANSSSQQSVSEIDIQ 77
Query: 780 ------KDIAKNEVNQDLTSSVDHQQQDALVNARSVPKRNSQHRSPKKLKTNNIQISXXX 833
K+ K E N ++S+D+ Q+ +N ++ S H + N ++I+
Sbjct: 78 LPSSEPKEGVKEESNLIESNSLDNVQE---INPQNTIGDKSAHTEEESSNDNLVKITAGT 134
Query: 834 XXXXXXXX--XXETNGFSG---SKEDIETAFEDDDLNEYLQTE-------VSSPPRSKIT 881
E + S SKED+ET + D+ Q E + PP ++
Sbjct: 135 IISDIMDEPVVDEDDKLSEEDLSKEDLETTLKGDENYSSSQKEIYDNDETIPKPPSPEVE 194
Query: 882 NNKPTAISSNADCSGSP-KASVDLED 906
+ + NA + S ++D+ED
Sbjct: 195 KIETSTSVENAYITNSQYNDTLDMED 220
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 856 ETAFEDDDLNEYLQTEVSSPPRS-KITNNKPTAISSNADCSGSPKASVDLEDIAKNE 911
+T+ + DL+ V+ PP S + NNK T+ N D S SP + ED+ N+
Sbjct: 406 KTSEDSTDLHTNEIPNVAQPPSSFEKENNKDTSKLENPDISSSPLSPT--EDLFPND 460
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 392 PTNVEIVFAQAEDINENSGRVNQDLISSVDHQQQDAVVNAKSVFREKFQRWSPKKLKTKS 451
PT I A+A + +S ++ D +D ++ ++ K +EK + KK K+K
Sbjct: 417 PTRNSIAMAEAYEKALSSVNIDGDEEVDIDVEETVETISEKPSKKEKKDKKEKKKEKSKK 476
Query: 452 KISLD 456
K S D
Sbjct: 477 KRSAD 481
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 384 HEMSDICNPTNVEIVFAQAEDINENSGRVNQDLISSV 420
H M D PT E F +A +I R NQD + SV
Sbjct: 2272 HNMVDAMGPTGYEGGFRKASEITMRLLRSNQDTLMSV 2308
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Query: 724 SGSKEDIETAFEDDDLNEYLQTEVSSPPRSKITNNKPTAISSNADCSGSPKA--SVDLKD 781
S S ED+++AF++ + + T+ + + I+ N + S+ G P S+ LK
Sbjct: 452 SSSLEDLQSAFQNTSFQDQVSTQ-NQANTADISQNTESGSSTQGQMFGIPPTTQSIPLKM 510
Query: 782 IA-KNEVNQDLTSSVDHQQQDALVNARSVPKRNSQHRSPKKLKTN 825
VN LT D ++++A+ + + P++ + RS +++KT+
Sbjct: 511 AGFPGGVNSSLT---DIKEEEAV--SENAPQQ--EERSFEQIKTS 548
>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
Length = 330
Score = 27.9 bits (59), Expect = 8.5
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 720 KNGFSGSKEDIETAFEDDDLNEYLQTEVSSP-PRSKITNNKPTAISSNADCSGS--PKAS 776
KNG K+ E + D+ + + S P P K+T + P A+ NA SG+ P S
Sbjct: 13 KNGPVEEKDVDERVKIEFDVESQKKWKASRPKPEIKLTASGPFALGPNASSSGTGRPIGS 72
Query: 777 V-----DLKDIAKNEVNQDLTSSVDHQQ--QDALVNARSVPKRNSQHR 817
V ++K+ K++ L +S H + + +V+ + + N Q +
Sbjct: 73 VYVPPPNVKNEEKDDALSKLAASSGHDEGHDEDMVDILKLRELNGQEQ 120
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 765 SNADCSGSPKASVDLKDIAKNEVNQDLTSSVDHQQQDALVNARSVPKRNSQHRSP 819
S+ + S SP S+++ D +KN N D + + + ++ L +P QH SP
Sbjct: 300 SSPNKSSSP-TSIEISDFSKNNENHDQSENKEEEEDMMLTRPIEIP----QHFSP 349
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.128 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,210,510
Number of Sequences: 5004
Number of extensions: 229679
Number of successful extensions: 607
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 35
length of query: 1137
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1056
effective length of database: 1,957,154
effective search space: 2066754624
effective search space used: 2066754624
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 59 (27.9 bits)
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