Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001781-TA|BGIBMGA001781-PA|IPR012934|Zinc finger,
AD-type
(1137 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610... 33 0.99
02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368... 33 0.99
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913... 32 2.3
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 31 5.3
07_03_0420 + 18002551-18002823,18003129-18003137 31 5.3
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 31 7.0
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 31 7.0
10_02_0137 - 5730778-5730873,5732137-5732334,5732413-5732625,573... 31 7.0
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891... 31 7.0
06_02_0331 - 14503063-14503697,14503744-14504019,14504353-14504635 31 7.0
12_02_0828 - 23502276-23503472,23503568-23504002,23504097-235042... 30 9.2
04_01_0592 + 7808821-7809210 30 9.2
03_05_0036 + 20094462-20095296,20111755-20111822,20112265-20112402 30 9.2
02_01_0709 + 5315119-5315194,5316068-5316303,5316426-5316578,531... 30 9.2
>02_05_0490 +
29456825-29457499,29458771-29459057,29460922-29461039,
29461451-29461972,29462058-29462170,29463033-29463053,
29463726-29463960,29464218-29464381,29464695-29464776,
29465077-29465166,29465625-29465858,29466347-29466418,
29466857-29467000,29467573-29467659,29467940-29468098,
29469216-29469476,29469789-29469836
Length = 1103
Score = 33.5 bits (73), Expect = 0.99
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 209 HETSDICNPTDVQIVFMQNEDINENS--TECFLSEVPHETSDICNPTNVQI--VSVQDEN 264
+E SD C+P D + + + I+E S T F+S P +D C P ++ + +V D +
Sbjct: 449 YEFSDKCHPLDPTLTNVDHLSISEESSLTAQFVSLEPAVDTDAC-PESLAVADATVSDSS 507
Query: 265 INENSTECF 273
I + S CF
Sbjct: 508 ILDRSIRCF 516
>02_05_0280 +
27435166-27435254,27436348-27436437,27436764-27436866,
27437318-27437377,27437745-27439148,27439227-27439328,
27439424-27439609,27439695-27439820,27439905-27440000,
27440509-27440574
Length = 773
Score = 33.5 bits (73), Expect = 0.99
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 285 CNPMNPQIVFVQNEDINGNSTECFLNEVPHETSDICNPTDVQIVFMQNEDIN-ENSTECF 343
CN MNP IV + + N+ F + +I + +QI F Q+ D N ++T+ F
Sbjct: 212 CNSMNPHIVAMPVNSKSINTVRAFNSTGKLLQHNIGSENPLQIKFCQHPDSNLASATDVF 271
Query: 344 LS--EVPHEMSDICNPTNVEIVFVQNE 368
LS +P ++I P N +Q+E
Sbjct: 272 LSLNNLPRIENEISCPPNKLGYCIQSE 298
>07_03_0100 +
13389899-13390219,13390723-13390841,13391220-13391315,
13391481-13391553,13392055-13392123
Length = 225
Score = 32.3 bits (70), Expect = 2.3
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 525 SQHRSPKKLKTNSMKSLDKNKF-------TACFISDLPCVVTRRIKKRKNLQRAFVQVDD 577
SQ RSP+ K N K K+ T C DLP V+ +I R LQ V D
Sbjct: 88 SQTRSPETEKMNKRVERRKRKYMVMMLPSTCCCWPDLPLVMNNKIHGRMALQANIVDKDR 147
Query: 578 KNENSGRGEYSNSASPL 594
+++ EY + + +
Sbjct: 148 EDQGGCSYEYKSCSDAI 164
>10_08_0894 - 21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 31.1 bits (67), Expect = 5.3
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 734 FEDDDLNEYLQTEVSSPPRSKITNNKPTAISSNADCSGSPKASVDLKDIAKNEVNQDLTS 793
F L + L ++ S + ++ I N D S ++ +A EV+ +
Sbjct: 1241 FTSKVLFKNLSVDMKDVKPSSLLKDRIRQIEGNPDFSNKDVSASQAPVVA--EVSSGVMP 1298
Query: 794 SVDHQQQDALVN----ARSVPKRNSQHRSPKKLKTNNI 827
+++H + +N A S+P SQ+ +P +L TNN+
Sbjct: 1299 TINHVEPQPEINSTSRATSLPNMLSQYAAPLRLPTNNM 1336
>07_03_0420 + 18002551-18002823,18003129-18003137
Length = 93
Score = 31.1 bits (67), Expect = 5.3
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 1094 PNASVDLKDKAKNEGKKHRQGSFTASYPT-LRGVKQPI 1130
P +V +++A G++HRQG + +PT +R +QP+
Sbjct: 56 PTMTVGNREQAAESGEQHRQGGWEWGHPTWIRQQRQPV 93
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 30.7 bits (66), Expect = 7.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 735 EDDDLNEYLQTEVSSPPRSKIT-NNKPTAISSNADCSGSPKASVD 778
+DDD +E E+SS + + NN+P A +A+C P VD
Sbjct: 277 QDDDRSENAVQELSSSEANTSSDNNEPLAADDSAECMNEPLPIVD 321
Score = 30.7 bits (66), Expect = 7.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 860 EDDDLNEYLQTEVSSPPRSKIT-NNKPTAISSNADCSGSPKASVD 903
+DDD +E E+SS + + NN+P A +A+C P VD
Sbjct: 277 QDDDRSENAVQELSSSEANTSSDNNEPLAADDSAECMNEPLPIVD 321
Score = 30.7 bits (66), Expect = 7.0
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 1056 EDDDLNEYLQTEVSSPPSLKIS-NNKPTAISSNADCSGSPNASVD 1099
+DDD +E E+SS + S NN+P A +A+C P VD
Sbjct: 277 QDDDRSENAVQELSSSEANTSSDNNEPLAADDSAECMNEPLPIVD 321
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 30.7 bits (66), Expect = 7.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 735 EDDDLNEYLQTEVSSPPRSKIT-NNKPTAISSNADCSGSPKASVD 778
+DDD +E E+SS + + NN+P A +A+C P VD
Sbjct: 280 QDDDRSENAVQELSSSEANTSSDNNEPLAADDSAECMNEPLPIVD 324
Score = 30.7 bits (66), Expect = 7.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 860 EDDDLNEYLQTEVSSPPRSKIT-NNKPTAISSNADCSGSPKASVD 903
+DDD +E E+SS + + NN+P A +A+C P VD
Sbjct: 280 QDDDRSENAVQELSSSEANTSSDNNEPLAADDSAECMNEPLPIVD 324
Score = 30.7 bits (66), Expect = 7.0
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 1056 EDDDLNEYLQTEVSSPPSLKIS-NNKPTAISSNADCSGSPNASVD 1099
+DDD +E E+SS + S NN+P A +A+C P VD
Sbjct: 280 QDDDRSENAVQELSSSEANTSSDNNEPLAADDSAECMNEPLPIVD 324
>10_02_0137 -
5730778-5730873,5732137-5732334,5732413-5732625,
5732748-5732870,5733726-5733841,5734530-5734897,
5735498-5735649,5736557-5736715,5737773-5737946
Length = 532
Score = 30.7 bits (66), Expect = 7.0
Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 4/139 (2%)
Query: 672 PRAKSDISKPKNLQSAFVQDEDKNEDSGRDIQISXXXXXXXXXXXXXEKNGFSGSKEDIE 731
P ++D++ QD+++NE+ G +S S + ED E
Sbjct: 305 PEERADLAPEIPAPPEIKQDDEENEEEGG---LSKSGKELKKLLGKAAGLNESDADEDDE 361
Query: 732 TAFEDDDLNEYLQTEVSSPPRSKITNNKPTAISSNADCSGSPKASVDLKDIAKNEVNQDL 791
++D+ + L + P+ + +N P + + G+P AS K K+ D
Sbjct: 362 DDDQEDESSPVLAPKQKDQPKDEPVDNSPAKPTPSGHARGTPPASKS-KQKRKSGGGDDS 420
Query: 792 TSSVDHQQQDALVNARSVP 810
+S + A V + + P
Sbjct: 421 KASGGAASKKAKVESDTKP 439
>08_02_0269 +
15087481-15087893,15087978-15088074,15089068-15089112,
15089281-15089492,15090809-15090911,15091002-15091097,
15091405-15091473,15093341-15093588,15093640-15093759,
15093847-15094284,15094503-15094620,15095262-15095303,
15097099-15097161,15097365-15097475,15097730-15097801,
15097875-15097993,15099682-15099745,15100238-15101860
Length = 1350
Score = 30.7 bits (66), Expect = 7.0
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 541 LDKNKFTACFISDLPCVVTRRIKKRKNLQRAFVQVDDKNENSGRGEYSNSAS 592
L K+K CFI D I +R + F+ D+ E+S YSNS S
Sbjct: 166 LVKSKIIRCFIEDASRKAIEPIPRRACTEDRFIVSDESLESSDDCSYSNSDS 217
>06_02_0331 - 14503063-14503697,14503744-14504019,14504353-14504635
Length = 397
Score = 30.7 bits (66), Expect = 7.0
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 407 ENSGRVNQDLISSVDHQQQDAVVNAKSVFREKFQRWSPKKLKTK 450
E +G + I+ ++ ++ A NAK +++E+ +RW KK+K K
Sbjct: 4 EGAGEWRKMQIAELEEWREKAYHNAK-IYKERTKRWHDKKIKIK 46
>12_02_0828 -
23502276-23503472,23503568-23504002,23504097-23504213,
23505330-23505396,23505685-23505725,23506161-23506237,
23506699-23506945
Length = 726
Score = 30.3 bits (65), Expect = 9.2
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 739 LNEYLQTEVSSPPRSKITNNKPTAISSNADCSGSPKASVDLKDIAKNEVNQDLTSSVDHQ 798
++++ +T PP+ NKPT CS S +A++D + L S +
Sbjct: 368 ISQWCETNGMEPPKRSTQPNKPTPA-----CSSSERANID-------ALLSKLCSPDTEE 415
Query: 799 QQDALVNARSVPKRNSQHR 817
Q+ A R + KRN+ +R
Sbjct: 416 QRSAAAELRLLAKRNANNR 434
>04_01_0592 + 7808821-7809210
Length = 129
Score = 30.3 bits (65), Expect = 9.2
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 417 ISSVDHQQQDAVVNAKSVFREKFQRWSPKKLKTKSKISLDK 457
I+ ++ ++ A NAK +++E+ +RW K++K K LDK
Sbjct: 14 IAELEEWREKASHNAK-IYKERTKRWHDKRIKIKKFKPLDK 53
>03_05_0036 + 20094462-20095296,20111755-20111822,20112265-20112402
Length = 346
Score = 30.3 bits (65), Expect = 9.2
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 871 EVSSPPRSKITNNKPTAISSNADCSGSPKASVDLEDIAKNEDI 913
E SS P SK+ PTA S SGS S + E+I EDI
Sbjct: 18 EGSSAPTSKVRRGNPTASSDLGQDSGSHAPSFE-EEIQLEEDI 59
>02_01_0709 + 5315119-5315194,5316068-5316303,5316426-5316578,
5317011-5317091,5317201-5317255,5317710-5318008,
5318053-5318064
Length = 303
Score = 30.3 bits (65), Expect = 9.2
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 1071 PPSLKISNNKPTAISSNAD---CSGSPNASVDLKDKAKNEGKKHRQGSFTASYPTLRGVK 1127
PP+ + +P+ +++ AD SG + +K + G KH G+ +A+ G K
Sbjct: 71 PPAAAAAGGQPSRLNNPADQPSASGKDGKAAVVKKEGGGGGGKHHGGASSAAASEHEGPK 130
Query: 1128 QP-IKNVRRV 1136
P K +RR+
Sbjct: 131 TPDAKTLRRL 140
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.128 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,853,475
Number of Sequences: 37544
Number of extensions: 1195310
Number of successful extensions: 2430
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2410
Number of HSP's gapped (non-prelim): 35
length of query: 1137
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1047
effective length of database: 11,414,388
effective search space: 11950864236
effective search space used: 11950864236
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 65 (30.3 bits)
- SilkBase 1999-2023 -