GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001781-TA|BGIBMGA001781-PA|IPR012934|Zinc finger,
AD-type
         (1137 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           26   4.9  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    26   4.9  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    26   4.9  
DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.     26   6.4  
DQ974167-1|ABJ52807.1|  434|Anopheles gambiae serpin 8 protein.        25   8.5  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 8    NSSNKLCVLCLCVGRSLNVVPEDKILK 34
            NS+  +CV C   G S   VP D+++K
Sbjct: 1177 NSTEPVCVKCRKSGNSHQEVPADELMK 1203


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 753 SKITNNKPTAISSNADCSGSPKASVDLKDIAKNEVNQDLTSSVDHQQQDALVNARSVPKR 812
           S+I   +     S A C  + +A    K+  +NE++Q+L S +  Q Q  + +     +R
Sbjct: 747 SRIERFRSPKERSLAQCKANLEAMTSTKEGLENELHQELMSQLSVQDQHEVDSLNDEIRR 806

Query: 813 NSQ 815
            +Q
Sbjct: 807 LNQ 809


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
            protein.
          Length = 476

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 1077 SNNKPTAIS------SNADCSGSPNASVDLKDKAKNEGKKHRQGSFT 1117
            SNN PT+ +       N +CS S      LK K K +  K  + SFT
Sbjct: 221  SNNTPTSTTMRDYSRKNENCSSSGGQRESLKPKPKGKVAKSSEFSFT 267


>DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 560 RRIKKRKNLQRAFVQVDDKNENSGRGEYSNSASP 593
           RR+K +KN QR   Q +  + N+      + A P
Sbjct: 321 RRMKNKKNSQRQSAQANSGSSNNSSSHSHSQAQP 354


>DQ974167-1|ABJ52807.1|  434|Anopheles gambiae serpin 8 protein.
          Length = 434

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 448 KTKSKISLDKEKFTTCFVDDLPRATSD--ICNPTNAHSVFVQDEDKNENSGRVNQDLISS 505
           ++  K +L   ++ T  VD  P  T+   I +P +A ++     +    SGR   +L+ +
Sbjct: 52  RSSQKFALQFYQYVTELVDYNPNVTTTNIIVSPFSAWNLLTLITEGA--SGRTLDELLVA 109

Query: 506 VDHQQQDALVN 516
           +D QQQ+ + N
Sbjct: 110 LDVQQQEQIRN 120


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.311    0.128    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,067,854
Number of Sequences: 2123
Number of extensions: 42018
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 8
length of query: 1137
length of database: 516,269
effective HSP length: 72
effective length of query: 1065
effective length of database: 363,413
effective search space: 387034845
effective search space used: 387034845
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 53 (25.4 bits)