GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001781-TA|BGIBMGA001781-PA|IPR012934|Zinc finger,
AD-type
         (1137 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   3.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   4.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   8.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 15/81 (18%), Positives = 30/81 (37%)

Query: 788 NQDLTSSVDHQQQDALVNARSVPKRNSQHRSPKKLKTNNIQISXXXXXXXXXXXXXETNG 847
           N   +   + +     +N+  +   NS   S +KLK + + +              E N 
Sbjct: 326 NNPFSDVEERRVSKTAMNSNQIVSDNSLSSSEEKLKQDILNLRTDISSSSSSISSSEEND 385

Query: 848 FSGSKEDIETAFEDDDLNEYL 868
           F   K  +E A ++  L  ++
Sbjct: 386 FWQPKPTLEDAPQNSLLPNFV 406


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 350 EMSDICNPTNVEIVFVQNEDINENSTECFLNEV 382
           E+S +  P +VE++F+ N  IN      F ++V
Sbjct: 609 ELSPLSVPDSVELLFINNNYINLVRPNTFTDKV 641


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 8.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 301 NGNSTECFLNEVPHETSDICNPTDVQI 327
           N   T  FLN+  H+  D+  P D+ I
Sbjct: 660 NIEGTSYFLNDYKHKDVDVTLPLDLHI 686


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.128    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 312,768
Number of Sequences: 429
Number of extensions: 13843
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 1137
length of database: 140,377
effective HSP length: 65
effective length of query: 1072
effective length of database: 112,492
effective search space: 120591424
effective search space used: 120591424
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 49 (23.8 bits)