SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001779-TA|BGIBMGA001779-PA|IPR007087|Zinc finger,
C2H2-type
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    58   2e-09
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    54   2e-08
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    35   0.016
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    34   0.037
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    34   0.037
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    33   0.065
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    33   0.065
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    31   0.20 
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.35 
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    30   0.61 
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    30   0.61 
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    29   1.1  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    28   1.9  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    28   1.9  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   2.5  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    28   2.5  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   3.3  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    27   3.3  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    27   3.3  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    27   4.3  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    27   4.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   5.7  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    26   7.5  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   9.9  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    26   9.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   9.9  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 22/155 (14%)

Query: 222 HRIRYQC--RSCRTRFGTKSKVLSHHAREHRANGKPVCV--PC--NRTFSSIATFKQHMK 275
           H + Y C  + C  RF TK K+ +H  R H       C    C  +  F   +  + H++
Sbjct: 140 HLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIR 199

Query: 276 MSMKHVPENDFNYMCSDCGNKFVNKTRLKDHI-----NWEHLKNYIHRCSDCKKSQAR-- 328
            +  HVP       CS CG +F     L+ H+       E  K Y      CKKS  R  
Sbjct: 200 EA--HVPS------CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSS 251

Query: 329 -LHYHITALHNKETPYKCTTCSARFSWHSCLTRHV 362
            L  HI+ +H     + C +C  +F +   L RH+
Sbjct: 252 ALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHL 286



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 237 TKSKVLSHHAREHRANGKPVCVPCNRTFSSIATF-KQHMKMSMK-HVPENDFNYMCSDCG 294
           ++  +L  H R H +N +P    C+ T  S A + K H+K+  + H     F+     C 
Sbjct: 35  SRPSLLEQHLRTH-SNERPFV--CDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCD 91

Query: 295 NKFVNKTRLKDHINWEHL-KNYI---HRCSDCKKSQARLHYHITALHNKETPYKCT--TC 348
            +F  +  L+ HI      K Y      C +C     +L  HI+A H    PY CT   C
Sbjct: 92  AQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHTHLLPYPCTYQDC 151

Query: 349 SARFSWHSCLTRHVRTIHSK 368
             RF+    L  HV   H K
Sbjct: 152 ELRFATKQKLQNHVNRAHEK 171



 Score = 34.3 bits (75), Expect = 0.028
 Identities = 43/179 (24%), Positives = 66/179 (36%), Gaps = 22/179 (12%)

Query: 201 SCLVCECYFGTAAALSYHANKH------RIRYQC--RSCRTRFGTKSKVLSHHAREHRAN 252
           SC +C   F TAA L +H   H      R  Y C    C+  F   S +  H +  H  N
Sbjct: 205 SCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGN 264

Query: 253 GKPVCVPCNRTFSSIATFKQHMKMSMKHVPENDFNYMCSDCGNKF--VNKTRLKDHINWE 310
               C  C   F      ++H++          +    ++CG K   +    + D    E
Sbjct: 265 MAFHCDSCGTKFGYKHMLQRHLERGTCKKAHKPY---INECGIKHDGIEGVAIHDQKEKE 321

Query: 311 HLKNYIHRCSDCKKSQARLHYHITALHNKET-PYKCT--TCSARFSWHSCLTRHVRTIH 366
              N +   SD  K   ++   +T    KE   Y C+   C+ RF     + RH+ + H
Sbjct: 322 LSSNLV---SDVAK---KIINEVTGHGYKEAREYSCSFPECNYRFKRLYDMHRHLNSHH 374


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 259 PCNRTFSSIATFKQHMKMSMKHVPENDF--NYMCS--DCGNKFVNKTRLKDHINWEHLKN 314
           P +R+ +S+   K     S K   E+    NY+C+   C  +F     LK H+N  H   
Sbjct: 539 PRSRSLNSLVGNKSENSSSSKAKSESKSQGNYVCTFAGCNKRFTRAYNLKSHMN-THTNY 597

Query: 315 YIHRCSDCKKSQARLH--YHITALHNKETPYKCTTCSARFSWHSCLTRHVRT 364
              +CS CKKS AR H       LH     + C TC+ RF+    L RH ++
Sbjct: 598 RPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHYKS 649



 Score = 32.7 bits (71), Expect = 0.086
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 205 CECYFGTAAALSYHANKH-RIR-YQCRSCRTRFGTKSKVLSHHAREHRANGKPVCVPCNR 262
           C   F  A  L  H N H   R +QC  C+  F  +      H + H       CV CN+
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDK-RRHEQLHTGIKAFACVTCNQ 635

Query: 263 TFSSIATFKQHMK 275
            F+ +    +H K
Sbjct: 636 RFARMDALNRHYK 648


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 35.1 bits (77), Expect = 0.016
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 319 CSDCKKSQAR---LHYHITALHNKETPYKCTTCSARFSWHSCLTRHVR 363
           C +C K   R   L  HI +LH  E P+ C  C  RFS    L +H R
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHER 471



 Score = 31.1 bits (67), Expect = 0.26
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 343 YKCTTCSARFSWHSCLTRHVRTIHSKEK 370
           + C  CS +F     L RH+R++H+ EK
Sbjct: 423 FVCPECSKKFKRSEHLRRHIRSLHTSEK 450



 Score = 30.7 bits (66), Expect = 0.35
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 226 YQCRSCRTRFGTKSKVLSHHAREHRANGKPVCVPCNRTFSSIATFKQHMKMSMKHVP 282
           + C  C  +F  +S+ L  H R    + KP    C + FS     +QH ++ +   P
Sbjct: 423 FVCPECSKKF-KRSEHLRRHIRSLHTSEKPFVCICGKRFSRRDNLRQHERLHVNASP 478


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 33.9 bits (74), Expect = 0.037
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 315 YIHRCSDCKKSQAR---LHYHITALHNKETPYKCTTCSARFSWHSCLTRHVRTIH 366
           Y+   + C K  AR   +  HI   H  + PY+C  C A F  H  L RH+R IH
Sbjct: 443 YVCLYNGCNKRIARKYNVESHIQT-HLSDRPYRCDLCKAGFVRHHDLKRHLR-IH 495


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 33.9 bits (74), Expect = 0.037
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 317 HRCSDCKKSQARLHYHITAL--HNKETPYKCTT--CSARFSWHSCLTRHVRTIHS 367
           ++C  C K+  RL +    +  H  E P+ CT   C+ RFS    LTRH R IH+
Sbjct: 26  YKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHAR-IHT 79



 Score = 29.9 bits (64), Expect = 0.61
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 342 PYKCTTCSARFSWHSCLTRHVRTIHSKEK 370
           PYKC  C+  F      TRH+RT H+ EK
Sbjct: 25  PYKCPLCTKAFYRLEHQTRHIRT-HTGEK 52


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 33.1 bits (72), Expect = 0.065
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 317 HRCSDCKKSQARLHYHITAL--HNKETPYKCT--TCSARFSWHSCLTRHVRT 364
           + C  CK+   R  + +  +  H  E P++C+  +C  RF+    L RHVRT
Sbjct: 4   YECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRT 55


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 33.1 bits (72), Expect = 0.065
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 13/67 (19%)

Query: 310 EHLKNYIHRCSDCKKSQARLHY---HITALHNKETPYKC-------TTCSARFSWHSCLT 359
           + +K Y+  C  C ++ ARL +   HI + H  E P+ C       T C  +FS    L 
Sbjct: 65  QKVKQYV--CETCTRAFARLEHLKRHIRS-HTNEKPFTCSEIDGLPTGCGRQFSRRDLLL 121

Query: 360 RHVRTIH 366
           RH + IH
Sbjct: 122 RHQQKIH 128



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 256 VCVPCNRTFSSIATFKQHMKMSMKHVPE--NDFNYMCSDCGNKFVNKTRLKDH 306
           VC  C R F+ +   K+H++      P   ++ + + + CG +F  +  L  H
Sbjct: 71  VCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRH 123



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 339 KETPYKCTTCSARFSWHSCLTRHVRTIHSKEK 370
           K   Y C TC+  F+    L RH+R+ H+ EK
Sbjct: 66  KVKQYVCETCTRAFARLEHLKRHIRS-HTNEK 96


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 319 CSDCKKSQARLHYHIT---ALHNKETPYKCTTCSARFSWHSCLTRHVRTIHS 367
           C  C K   R H ++T   A H+K  P  C  C  +      L RH++  H+
Sbjct: 33  CDQCAKRFTR-HENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHN 83



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 335 ALHNKETPYKCTTCSARFSWHSCLTRHVRTIHSK 368
           +L + +  + C  C+ RF+ H  LTRH +  HSK
Sbjct: 23  SLIDSKRVFPCDQCAKRFTRHENLTRH-KACHSK 55


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 30.7 bits (66), Expect = 0.35
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 323 KKSQARLHYHITALHNKETPYKCTTCSARFSWHSCLTRHVRTIHSKEKKSAT 374
           +K  AR H+     H     + C  CS+ F+    L RHV   H K+  + +
Sbjct: 30  RKEHARRHFRS---HTNSKAFICPHCSSSFTRSDVLNRHVNQKHVKQNDAGS 78



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 260 CNRTFSSIATFKQHMKMSMKHVPENDFNYMCSDCGNKFVNKTRLKDHINWEHLK 313
           C ++F    T K+H +   +    N   ++C  C + F     L  H+N +H+K
Sbjct: 24  CTKSF----TRKEHARRHFRS-HTNSKAFICPHCSSSFTRSDVLNRHVNQKHVK 72


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 10/79 (12%)

Query: 299 NKTRLKDHINWEHLKNYIHRCSDCKK------SQARLHYHITALHNKETPYKCTT--CSA 350
           N   + DHI     K Y     DC +      S+  L  H+ + H  E P+ C+   C  
Sbjct: 58  NINSILDHIGNRRPK-YTCEWDDCPRKGMVQTSRFALVAHLRS-HTGEKPFICSVPECDR 115

Query: 351 RFSWHSCLTRHVRTIHSKE 369
            F+    L +H+RT+H  +
Sbjct: 116 SFTRSDALAKHMRTVHEAD 134


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 257 CVPCNRTFSSIATFKQHMKMSMK-HVPENDF 286
           C+ C  +FSS  T K+HMK S   ++PE ++
Sbjct: 210 CLFCAASFSSFDTCKKHMKASHSLYIPEREY 240


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 321 DCKKSQARLHY--HITALHNKETPYKCTTCSARFSWHSCLTRHVRTIHSKEK 370
           DC KS  R  +       H     + C+ C+  F+    L RHV+ +H +++
Sbjct: 32  DCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQ 83



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 240 KVLSHHAREHRANGKP--VCV--PCNRTFSSIATFKQHMKMSMKHVPENDFNYMCSDCGN 295
           K L   +R HR  G P   C    C ++F    T K+H++   +   EN   + CS C  
Sbjct: 10  KPLKKRSRAHRL-GDPRFYCTYPDCPKSF----TRKEHLRRH-ERTHENVKAFSCSFCNR 63

Query: 296 KFVNKTRLKDHINWEHLK 313
            F     L  H+   HL+
Sbjct: 64  AFARSDVLNRHVQQMHLQ 81



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 211 TAAALSYHANKHRI---RYQCR--SCRTRFGTKSKVLSHHAREHRANGKPVCVPCNRTFS 265
           T   L   +  HR+   R+ C    C   F T+ + L  H R H       C  CNR F+
Sbjct: 8   TEKPLKKRSRAHRLGDPRFYCTYPDCPKSF-TRKEHLRRHERTHENVKAFSCSFCNRAFA 66

Query: 266 SIATFKQHMK 275
                 +H++
Sbjct: 67  RSDVLNRHVQ 76


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 80  KEIELTESDIEAERDTEASSDSFVNALFKCEKCVEAFPNQEDLNDH-NLKKHNKSRSIQA 138
           +E+ +    +E +  T  +   + N L  C     +    + +N   NLK H  S S+Q 
Sbjct: 235 RELRIPTQTLEPKFTTNTAK--YANELVSCSMLDSSSTLSKSVNSKINLKSHQSSSSVQN 292

Query: 139 QSRLTADFEQHWRQS 153
            SR     +   RQS
Sbjct: 293 SSRKLTSSQLTLRQS 307


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 104 NALFKCEKCVEAFPNQEDLNDHNLKKH 130
           NA F+C+KC   F  Q  L +H    H
Sbjct: 136 NATFRCDKCDMMFVKQSGLTNHKRTYH 162



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 343 YKCTTCSARFSWHSCLTRHVRTIHSKE 369
           ++C  C   F   S LT H RT H  E
Sbjct: 139 FRCDKCDMMFVKQSGLTNHKRTYHQVE 165


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 30  ETSEELDWHIAASEEKETPSDQQCSETETVVQPXXXXXXXXXXXRLMHLYKEIELTESDI 89
           E+ EE +  +   E+KE+ SD     + +  +             ++   K  E  E   
Sbjct: 145 ESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVE--KTEEKKEGSS 202

Query: 90  EAERDTEASSDS 101
           E+  D+E+SSDS
Sbjct: 203 ESSSDSESSSDS 214


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 202 CLVCECYFGTAAALSYHANKHRIRYQCRSCRTRFGTKSKVLSH 244
           C  C+  F       +  +   +RY C SC+  F     V +H
Sbjct: 365 CFACQLPFPKPPVSPFDESTSSMRYACPSCKNHFCLDCDVFAH 407


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 17/121 (14%)

Query: 80   KEIELTESDIEAE--RDTEASSDSFVNALFKCEKCVEAFPNQEDLNDHNLKKHNKSRSIQ 137
            ++I+ ++S +  +  RD    S SF N         E   N   ++ H  ++  +++++ 
Sbjct: 1410 EDIQRSDSKLREDQSRDRTPQSRSFTN---------ENNDNLRSVSRHTRREPQQAQNLN 1460

Query: 138  AQSRLTADFEQHWRQSRSIQAQPRF----SADFEQHWPLQANLSTDNAHQMTRPPFSEGS 193
            A+    +     WRQ+ ++   PR     S +  +    +AN  T N ++  R   +EG 
Sbjct: 1461 ARREHESQKSDRWRQNGNVNRNPRVSNNNSTNVSRERSSEANHRTSNDNK--RDEVTEGK 1518

Query: 194  D 194
            D
Sbjct: 1519 D 1519


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 287 NYMCSDCGNKFVNKTRLKDHINWEHLKNYIH-RCSDCKKS 325
           N    D    F N +R+ D +NWE  KN I   C +  +S
Sbjct: 7   NVNLRDLARIFTNLSRIDDAVNWEINKNQIEITCLNSSRS 46


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 104 NALFKCEKCVEAFPNQEDLNDHNLKKHNKSRSIQAQSRLTADF 146
           N  ++CE C + + N   L  H    H +    QAQ  +  +F
Sbjct: 396 NKPYRCEVCSKRYKNLNGLKYHRTHSHLQVSMAQAQREVQMNF 438


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 226 YQCRSCRTRFGTKSKVLSHHAREHRANGKPVCV 258
           Y C  C+T    K  +LSH   ++R    P C+
Sbjct: 14  YVCAKCKTHLAFKGHLLSH---DYRGKNGPACL 43


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 99  SDSFVNALFKCEKCVEAFPNQEDLNDHNLKKHNKSRSIQAQSRLTADFEQHWRQSRSIQA 158
           S S V   F+   C+  F  Q   NDH+L  H  +R    QS L   F+    +S + + 
Sbjct: 44  SSSKVLKYFRITGCLINFGKQP-ANDHHLWGHCGARLKHTQSDLIDRFKNANLKSVNEEN 102

Query: 159 QPRFSADFEQH 169
             +F ++ E H
Sbjct: 103 LKKFFSELENH 113


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 37  WHIAASEEKETPSDQQCSETETVVQPXXXXXXXXXXXRLMHLYKEIELTESD 88
           W +  ++ + T  D QCS + +VV P            L++ ++E  L ES+
Sbjct: 632 WILYTNQNRTTTLDYQCSSSNSVVSP---YASGLTLKNLIYPFEEYILQESN 680


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 118 NQEDLNDHNLKKHNKSRSIQAQSRLTADFEQHWRQSRSIQAQPRFSADFEQHWPLQAN 175
           N +DLN     KH+ S + ++ +   ++ ++   Q      +P+ S DF    P Q +
Sbjct: 108 NLDDLNMSEEPKHHDSSNKESTNLDNSNMDESENQKNFKIEEPKPSGDFRNEGPKQCD 165


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 14  QSKLNTQNTLIINYDPETSEELD 36
           + + + +N LII  DPET+ +LD
Sbjct: 439 KKRRDLRNELIITIDPETARDLD 461


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 292 DCGNKFVNKTRLKDHINWEHLKNYIHRCSDCKKSQARLHYHITALHNK 339
           D  N   N TR  + + W+  ++    C D  + Q +  Y     H K
Sbjct: 305 DVVNLTANPTRANEELKWKTSRSIYEICVDTWRWQQKYPYGFDLTHTK 352


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 26  NYDPETSEELDWHIAASEEKETPSDQ 51
           ++ PE+SE LD H +  +   TPS+Q
Sbjct: 785 DWRPESSESLDSHESEYKLNNTPSEQ 810


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.127    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,719,248
Number of Sequences: 5004
Number of extensions: 70740
Number of successful extensions: 308
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 52
length of query: 374
length of database: 2,362,478
effective HSP length: 74
effective length of query: 300
effective length of database: 1,992,182
effective search space: 597654600
effective search space used: 597654600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)

- SilkBase 1999-2023 -