Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001778-TA|BGIBMGA001778-PA|IPR007087|Zinc finger,
C2H2-type
(218 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 50 3e-07
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 50 4e-07
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 46 3e-06
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 44 1e-05
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 43 3e-05
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 42 5e-05
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 42 9e-05
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 40 2e-04
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 40 4e-04
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 39 7e-04
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 34 0.019
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M... 31 0.13
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 31 0.13
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 28 0.93
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 27 2.8
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 27 2.8
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 6.5
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 50.0 bits (114), Expect = 3e-07
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 144 RAHQNIKENLRDKMCQKCGKAFRYKKSLREHELIHTGEKPLVCGECGRRFRQGAALYTHC 203
++H N N R C C K+F + R HE +HTG K C C +RF + AL H
Sbjct: 588 KSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHY 647
Query: 204 R-RVHQN 209
+ V QN
Sbjct: 648 KSEVGQN 654
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 26 CGKRYPSKYSLLQHERLHRGPLPREECGVCHKMI-RVDLVKAHARIHEDRQSYECLKCDK 84
C KR+ Y+L H H P + C +C K R + H ++H +++ C+ C++
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQ-CSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQ 635
Query: 85 KYVSKASYENHLK 97
++ + H K
Sbjct: 636 RFARMDALNRHYK 648
Score = 31.9 bits (69), Expect = 0.075
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 23 CSVCGKRYPSKYSLLQHERLHRGPLPREECGVCH-KMIRVDLVKAH 67
CS+C K + ++ +HE+LH G + C C+ + R+D + H
Sbjct: 602 CSICKKSFARQHDKRRHEQLHTG-IKAFACVTCNQRFARMDALNRH 646
Score = 30.7 bits (66), Expect = 0.17
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 161 CGKAFRYKKSLREHELIHTGEKPLVCGECGRRFRQGAALYTHCRRVHQNTH 211
C K F +L+ H HT +P C C + F + H +R H+ H
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFAR-----QHDKRRHEQLH 622
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/81 (20%), Positives = 29/81 (35%)
Query: 15 RAHAEGLACSVCGKRYPSKYSLLQHERLHRGPLPREECGVCHKMIRVDLVKAHARIHEDR 74
R + L V K S S + E +G G + R +K+H H +
Sbjct: 538 RPRSRSLNSLVGNKSENSSSSKAKSESKSQGNYVCTFAGCNKRFTRAYNLKSHMNTHTNY 597
Query: 75 QSYECLKCDKKYVSKASYENH 95
+ ++C C K + + H
Sbjct: 598 RPFQCSICKKSFARQHDKRRH 618
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 49.6 bits (113), Expect = 4e-07
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 151 ENLRDKMCQKCGKAFRYKKSLREHELIHTGEKPLVCGE-------CGRRFRQGAALYTHC 203
+ ++ +C+ C +AF + L+ H HT EKP C E CGR+F + L H
Sbjct: 65 QKVKQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQ 124
Query: 204 RRVHQNTHDRAR 215
+++H+N R R
Sbjct: 125 QKIHRNPQPRRR 136
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 46.4 bits (105), Expect = 3e-06
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 157 MCQKCGKAFRYKKSLREH-ELIHTGEKPLVCGECGRRFRQGAALYTHCRRVHQNTHDR 213
+C +C K F+ + LR H +HT EKP VC CG+RF + L H R+H N R
Sbjct: 424 VCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQH-ERLHVNASPR 479
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 12 HSRRAH-AEGLACSVCGKRYPSKYSLLQHERLHRGPLPREEC 52
H R H +E +CGKR+ + +L QHERLH PR C
Sbjct: 441 HIRSLHTSEKPFVCICGKRFSRRDNLRQHERLHVNASPRLAC 482
Score = 33.9 bits (74), Expect = 0.019
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 139 TRHIRRAHQNIKENLRDKMCQKCGKAFRYKKSLREHELIHTGEKP-LVC 186
+ H+RR +++ + + +C CGK F + +LR+HE +H P L C
Sbjct: 435 SEHLRRHIRSLHTSEKPFVCI-CGKRFSRRDNLRQHERLHVNASPRLAC 482
Score = 29.9 bits (64), Expect = 0.30
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 180 GEKPLVCGECGRRFRQGAALYTHCRRVH 207
G K VC EC ++F++ L H R +H
Sbjct: 419 GGKSFVCPECSKKFKRSEHLRRHIRSLH 446
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 44.4 bits (100), Expect = 1e-05
Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 25/205 (12%)
Query: 26 CGKRYPSKYSLLQHERLHRG--PLPREECGVCHKMIRVDLVKAHARIHEDRQSYECL--K 81
CGK+Y L QH R H P + G R +K H R H + + + C
Sbjct: 30 CGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDG 89
Query: 82 CDKKYVSKASYENHLKFSR---AHAVVDVLKDNPPSDGLGMRPDTD---IYIIPQP---- 131
CD ++ ++ E H++ R +A D S +R +++P P
Sbjct: 90 CDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHTHLLPYPCTYQ 149
Query: 132 -----LATRRCITRHIRRAHQN-IKENLRDKMCQKCGKAFRYKKSLREHELIHTGEKPLV 185
AT++ + H+ RAH+ I + + C + F L+ H I P
Sbjct: 150 DCELRFATKQKLQNHVNRAHEKIISYSCPHESCVG-HEGFEKWSQLQNH--IREAHVP-S 205
Query: 186 CGECGRRFRQGAALYTHCRRVHQNT 210
C CGR+F+ A L H +HQ T
Sbjct: 206 CSICGRQFKTAAHLRHHV-VLHQTT 229
Score = 42.7 bits (96), Expect = 4e-05
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 12 HSRRAHAEGLACSVCGKRYPSKYSLLQHERLHRGPLPREE---CGV--CHK-MIRVDLVK 65
H R AH +CS+CG+++ + L H LH+ L + C + C K R +K
Sbjct: 197 HIREAHVP--SCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALK 254
Query: 66 AH-ARIHEDRQSYECLKCDKKYVSKASYENHLK 97
H + IHE ++ C C K+ K + HL+
Sbjct: 255 KHISVIHEGNMAFHCDSCGTKFGYKHMLQRHLE 287
Score = 42.3 bits (95), Expect = 5e-05
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 27/203 (13%)
Query: 26 CGKRYPSKYSLLQHERLHRGPLPR----EECGVC---HKMIRVDLVKAHARIHEDRQSYE 78
C ++ ++ L +H +HR P P E C C H+ +R + H + +Y+
Sbjct: 90 CDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHTHLLPYPCTYQ 149
Query: 79 CLKCDKKYVSKASYENHLKFSRAHAVVDVLKDNPPS----DGLGMRPDTDIYI----IPQ 130
C+ ++ +K +NH+ +RAH + S +G +I +P
Sbjct: 150 --DCELRFATKQKLQNHV--NRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIREAHVPS 205
Query: 131 -PLATRRCITR-HIRR---AHQNIKENLRDKMC--QKCGKAFRYKKSLREH-ELIHTGEK 182
+ R+ T H+R HQ E + C + C K+F +L++H +IH G
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265
Query: 183 PLVCGECGRRFRQGAALYTHCRR 205
C CG +F L H R
Sbjct: 266 AFHCDSCGTKFGYKHMLQRHLER 288
Score = 34.7 bits (76), Expect = 0.011
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 159 QKCGKAFRYKKSLREHELIHTGEKPLVCG--ECGRRFRQGAALYTHCRRVHQN 209
++CGK + L +H H+ E+P VC C + F + + L H +R H N
Sbjct: 28 EECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIH-KRCHTN 79
Score = 32.3 bits (70), Expect = 0.057
Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 146 HQNIKENLRDKMCQK--CGKAFRYKKSLREHELIHTGEKPLVCGECGRRFRQGAALYT-- 201
H N R +C C KAF K L+ H+ HT KP C G A YT
Sbjct: 43 HLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDG----CDAQFYTQQ 98
Query: 202 HCRRVHQNTHDRARPTA 218
H R H H + +P A
Sbjct: 99 HLER-HIEVHRKPKPYA 114
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 43.2 bits (97), Expect = 3e-05
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 154 RDKMCQKCGKAFRYKKSLREHELIHTGEKPLVC--GECGRRFRQGAALYTHCRRVHQNTH 211
R C C KAF + H HTGEKP VC C +RF + L H R+H N +
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHA-RIHTNAN 82
Query: 212 DRARPTA 218
R A
Sbjct: 83 SRRNAAA 89
Score = 28.3 bits (60), Expect = 0.93
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 23 CSVCGKRYPSKYSLLQHERLHRGPLPREEC---GVCHKMIRVDLVKAHARIHEDRQS 76
C +C K + +H R H G P C G + R D + HARIH + S
Sbjct: 28 CPLCTKAFYRLEHQTRHIRTHTGEKPHV-CTFPGCAKRFSRSDELTRHARIHTNANS 83
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 42.3 bits (95), Expect = 5e-05
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 158 CQKCGKAFRYKKSLREHELIHTGEKPLVCG--ECGRRFRQGAALYTHCRRVHQNTHDRAR 215
C + G + +L H HTGEKP +C EC R F + AL H R VH+ D R
Sbjct: 80 CPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVHE--ADTLR 137
Query: 216 PT 217
P+
Sbjct: 138 PS 139
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 41.5 bits (93), Expect = 9e-05
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 134 TRRCITRHIRRAHQNIKENLRDKMCQKCGKAFRYKKSLREHELIHTGEKPLVC--GECGR 191
+R+ H + + N+R + C +C + F SL+ H HTGE+P VC CG+
Sbjct: 447 SRKIAQSHTGSSSTSSAANVRYR-CTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGK 505
Query: 192 RFRQGAALYTHCRRVH 207
F + + H +R+H
Sbjct: 506 AFNVRSNMRRH-QRIH 520
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 161 CGKAFRYKKSLREHELIHTGEKPLVCGECGRRFRQGAALYTHCRRVH---QNTHDR 213
C K+F K+ LR HE H K C C R F + L H +++H QN +R
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLSER 88
Score = 29.5 bits (63), Expect = 0.40
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 36 LLQHERLHRGPLPREECGV--CHKMI-RVDLVKAHARIHEDRQSYECLKCDKKYVSKASY 92
L + R HR PR C C K R + ++ H R HE+ +++ C C++ +
Sbjct: 12 LKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVL 71
Query: 93 ENHLK 97
H++
Sbjct: 72 NRHVQ 76
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 141 HIRRAHQNIKENLRDKMCQKCGKAFRYKKSLREH 174
H+RR H+ EN++ C C +AF L H
Sbjct: 42 HLRR-HERTHENVKAFSCSFCNRAFARSDVLNRH 74
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 26 CGKRYPSKYSLLQHERLHRGPLPREECGVCHK-MIRVDLVKAHA-RIHEDRQS 76
C K + K L +HER H + C C++ R D++ H ++H +Q+
Sbjct: 33 CPKSFTRKEHLRRHERTHEN-VKAFSCSFCNRAFARSDVLNRHVQQMHLQKQN 84
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/59 (30%), Positives = 24/59 (40%)
Query: 159 QKCGKAFRYKKSLREHELIHTGEKPLVCGECGRRFRQGAALYTHCRRVHQNTHDRARPT 217
Q C K+F K+ R H HT K +C C F + L H + H +D T
Sbjct: 22 QGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHVKQNDAGSQT 80
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 38.7 bits (86), Expect = 7e-04
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 26 CGKRYPSKYSLLQHERLHRGPLPREECGVCHK-MIRVDLVKAHARIHEDRQSYECLKCDK 84
C KR KY++ H + H P C +C +R +K H RIHE+ + Y C +C K
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYR-CDLCKAGFVRHHDLKRHLRIHENGRPYVC-ECLK 507
Query: 85 KY 86
++
Sbjct: 508 RF 509
Score = 35.1 bits (77), Expect = 0.008
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 148 NIKENLRDK--MCQKCGKAFRYKKSLREHELIHTGEKPLVCGECGRRFRQGAALYTHCRR 205
+I+ +L D+ C C F L+ H IH +P VC EC +RF + AL H +R
Sbjct: 463 HIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVC-ECLKRFNRLDALNRHKQR 521
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 161 CGKAFRYKKSLREHELIHTGEKPLVCGECGRRFRQGAALYTHCRRVHQN 209
C K K ++ H H ++P C C F + L H R+H+N
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHL-RIHEN 497
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 55 CHKMI-RVDLVKAHARIHEDRQSYECLKCDKKYVSKASYENHLK 97
C+K I R V++H + H + Y C C +V + HL+
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLR 493
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 33.9 bits (74), Expect = 0.019
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 158 CQKCGKAFRYKKSLREHELIHTGEKPLVCG--ECGRRFRQGAALYTHCR 204
C C + F ++ H HTGEKP C C +RF + L H R
Sbjct: 6 CPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVR 54
>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 31.1 bits (67), Expect = 0.13
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 148 NIKENLRDKMCQKCGKAFRYKKSLREHELIHTGEKPLVCGECGRRFR 194
N + ++R C++ + +H L+ T E L+C +C + FR
Sbjct: 7 NAQVSIRTACCRRWIDCIECHNEIADHPLLKTSELTLICKKCRKAFR 53
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 65 KAHARIHEDRQSYECLKCDKKYVSKASYENHLKFSRAHAVVDVLKDNPPSDGLGMRPDTD 124
+ H ++E++ +E +C+ V ++EN +K+ + + NP +G R D
Sbjct: 57 QVHMWMYEEKIQHEGKECNLTEVFNTTHEN-VKYLKGIKCPSNVFANPDIRDVGSRSDIL 115
Query: 125 IYIIPQPLATRRC 137
++++P R C
Sbjct: 116 VWVLPHQFVVRIC 128
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 28.3 bits (60), Expect = 0.93
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 133 ATRRCITRHIRRAHQNIKENLR---DKMCQKCGKAFRYKKSLREHELIHTGEKP 183
A + + R +RR +++ LR + +C KC F + +L HE + P
Sbjct: 149 AIKSALRRRMRRREGRVQKALRPTPNLICSKCNTTFNHSTALMMHEATCLNQVP 202
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 23 CSVCGKRYPSKYSLL 37
C C ++YP KYSLL
Sbjct: 137 CHTCREKYPDKYSLL 151
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 61 VDLVKAHARIHEDRQSYE-CLKCDKKYVSKASYENHLKFSRAH 102
+ + K + + + + Y+ C C+KK+ S+ +Y +H+ S+ H
Sbjct: 53 LSIQKQNEEVQKKAEFYQNCEVCNKKFYSEGAYSSHMA-SKKH 94
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 149 IKENLRDKMCQKCGKAFRYKKSLREHELIHTG 180
+ E +D+ + K F+ ++ HEL+H+G
Sbjct: 869 LSETKQDESFSELAKIFQEGSNITSHELLHSG 900
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.324 0.137 0.435
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,039,873
Number of Sequences: 5004
Number of extensions: 43055
Number of successful extensions: 191
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 43
length of query: 218
length of database: 2,362,478
effective HSP length: 70
effective length of query: 148
effective length of database: 2,012,198
effective search space: 297805304
effective search space used: 297805304
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)
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