GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001778-TA|BGIBMGA001778-PA|IPR007087|Zinc finger,
C2H2-type
         (218 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    63   7e-12
AY146734-1|AAO12094.1|  176|Anopheles gambiae odorant-binding pr...    33   0.009
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    30   0.062
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    26   0.76 
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   1.3  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   4.1  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 62.9 bits (146), Expect = 7e-12
 Identities = 55/217 (25%), Positives = 82/217 (37%), Gaps = 16/217 (7%)

Query: 14  RRAHAEGLACSVCGKRYPSKYSLLQHERLHRGPLPREECGVCHKMIRVDLVKA--HARIH 71
           R  H     C+ C         L +H R H G  P + C  C      D  K   H RIH
Sbjct: 205 RHTHERPHKCTECDYASVELSKLKRHIRTHTGEKPFQ-CPHC-TYASPDKFKLTRHMRIH 262

Query: 72  EDRQSYECLKCDKKYVSKASYENHLKFSRA-HAVVDVLKDNPPSDGLGMRPDTDIYI--- 127
              + Y C  C  ++    S + H    +  +  V   K  P +   G + D  I++   
Sbjct: 263 TGEKPYSCDVCFARFTQSNSLKAHKMIHQVGNKPVFQCKLCPTT--CGRKTDLRIHVQNL 320

Query: 128 --IPQPLATRRCIT----RHIRRAHQNIKENLRDKMCQKCGKAFRYKKSLREHELIHTGE 181
               +P+  +RC +    R+  + H    E  +   C+ C  A    + L  H L+HT +
Sbjct: 321 HTADKPIKCKRCDSTFPDRYSYKMHAKTHEGEKCYRCEYCPYASISMRHLESHLLLHTDQ 380

Query: 182 KPLVCGECGRRFRQGAALYTHCRRVHQNTHDRARPTA 218
           KP  C +C + FRQ   L  H    H   +    P A
Sbjct: 381 KPYKCDQCAQTFRQKQLLKRHMNYYHNPDYVAPTPKA 417



 Score = 54.4 bits (125), Expect = 3e-09
 Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 12/187 (6%)

Query: 31  PSKYSLLQHERLHRGPLPREECGVC-HKMIRVDLVKAHARIHEDRQSYECLKCDKKYVSK 89
           P+K +  + +R  +       C  C +   ++ L+  H + H + + ++C+ C++ + + 
Sbjct: 108 PAKKTQTRGKRTQQSTGSTYMCNYCNYTSNKLFLLSRHLKTHSEDRPHKCVVCERGFKTL 167

Query: 90  ASYENHLKF---SRAHAVVDVLKDNP-PSDGLGMRPDTDIYIIPQPLATRRC--ITRHIR 143
           AS +NH+     ++ H       DN   + G  +R     +   +P     C   +  + 
Sbjct: 168 ASLQNHVNTHTGTKPHRCKHC--DNCFTTSGELIRHIRYRHTHERPHKCTECDYASVELS 225

Query: 144 RAHQNIKENLRDK--MCQKCGKAFRYKKSLREHELIHTGEKPLVCGECGRRFRQGAALYT 201
           +  ++I+ +  +K   C  C  A   K  L  H  IHTGEKP  C  C  RF Q  +L  
Sbjct: 226 KLKRHIRTHTGEKPFQCPHCTYASPDKFKLTRHMRIHTGEKPYSCDVCFARFTQSNSLKA 285

Query: 202 HCRRVHQ 208
           H + +HQ
Sbjct: 286 H-KMIHQ 291



 Score = 41.9 bits (94), Expect = 1e-05
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 154 RDKMCQKCGKAFRYKKSLREHELIHTGEKPLVCGECGRRFRQGAALYTHCRRVHQNTHDR 213
           R   C  C + F+   SL+ H   HTG KP  C  C   F     L  H R  +++TH+R
Sbjct: 153 RPHKCVVCERGFKTLASLQNHVNTHTGTKPHRCKHCDNCFTTSGELIRHIR--YRHTHER 210



 Score = 29.9 bits (64), Expect = 0.062
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 157 MCQKCGKAFRYKKSLREHELIHTGEKPLVCGECGRRFRQGAALYTHCRRVHQNTHDRARP 216
           MC  C         L  H   H+ ++P  C  C R F+  A+L  H      NTH   +P
Sbjct: 128 MCNYCNYTSNKLFLLSRHLKTHSEDRPHKCVVCERGFKTLASLQNHV-----NTHTGTKP 182


>AY146734-1|AAO12094.1|  176|Anopheles gambiae odorant-binding
           protein AgamOBP24 protein.
          Length = 176

 Score = 32.7 bits (71), Expect = 0.009
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 123 TDIYIIPQPLATRRCITRHIRRAHQNIKENLRD 155
           + +++ P PL   R    H+RR HQN +E +++
Sbjct: 34  SSLFVFPSPLQGARLEAEHVRRIHQNARECVKE 66



 Score = 23.8 bits (49), Expect = 4.1
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 195 QGAALYT-HCRRVHQNTHDRARPT 217
           QGA L   H RR+HQN  +  + T
Sbjct: 44  QGARLEAEHVRRIHQNARECVKET 67


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 29.9 bits (64), Expect = 0.062
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 52  CGVCHKMIRVDLVKAHARIHEDRQSYECLKCDKKYVSKASYENHLK 97
           C  CHK +       HA IH   QS+EC  C +K+  + + + H K
Sbjct: 901 CVSCHKTVSNRW--HHANIHRP-QSHECPVCGQKFTRRDNMKAHCK 943



 Score = 25.8 bits (54), Expect = 1.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 186 CGECGRRFRQGAALYTHCRRVHQNTHDR 213
           C  CG++F +   +  HC+  H    DR
Sbjct: 925 CPVCGQKFTRRDNMKAHCKVKHPELRDR 952


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 26.2 bits (55), Expect = 0.76
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 70  IHEDRQSYECLKCDKKYVSKASYENH 95
           I  + Q ++C  CD  Y +K  Y+ H
Sbjct: 342 ITSEGQRFQCNLCDMSYRTKLQYQKH 367



 Score = 23.4 bits (48), Expect = 5.4
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 49  REECGVCHKMIRVDL-VKAHA----RIHEDRQSYECLKCDKKYVSKASYENHLK 97
           R +C +C    R  L  + H     RI  +    +C  C K +  +  Y+ H++
Sbjct: 348 RFQCNLCDMSYRTKLQYQKHEYEVHRISNENFGIKCTICHKLFSQRQDYQLHMR 401


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 67  HARIHEDRQSYECL--KCDKKYVSKASYENHLKFSRAHAVVDVLKDNPPSDGLGMRPDTD 124
           HA + + RQ ++ L  +CDK    +   EN +K  +        +     + L     T 
Sbjct: 611 HALLAQKRQEHQRLVRECDKIRNQRGQIENSIKELQERCAELREQKRDLQEQLSKYQQTK 670

Query: 125 IYIIPQPLATRRCITRHIRRAHQNIK---------ENLRDKMCQKCGKAFRYKKSLREHE 175
           + +  Q    +    R +    + +K         E L D+  +K     RY  + REH+
Sbjct: 671 MKVKRQEQKCKELTARLVNVDEEKVKFERSCRTIIEQLLDQQRRKVAALERYAAASREHD 730

Query: 176 LI 177
           L+
Sbjct: 731 LL 732


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 25  VCGKRYPSKYSLLQHERLHRGPLPREECGVCHKMIRVDLVKAHARIHEDRQSYECLKCDK 84
           VCG R  S    +   RL   PL  +E   CH+    D   + A I  + ++       +
Sbjct: 823 VCGFRSISYSVAVLMPRLIPHPLLIKEDARCHQRYLADPEASRAVIRREERAVTLEVWQR 882

Query: 85  KYVSKASYENHLKFSR-AHAVV 105
           ++ + AS     +++R AH ++
Sbjct: 883 EWDANASNPGASRYARWAHRLI 904


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.324    0.137    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,095
Number of Sequences: 2123
Number of extensions: 11363
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 13
length of query: 218
length of database: 516,269
effective HSP length: 61
effective length of query: 157
effective length of database: 386,766
effective search space: 60722262
effective search space used: 60722262
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)