Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001776-TA|BGIBMGA001776-PA|IPR007087|Zinc finger,
C2H2-type
(1293 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0838 - 28550036-28550237,28550595-28550676,28550972-285510... 38 0.070
10_02_0023 + 4306350-4306908,4308429-4308814,4308917-4308991,430... 33 1.1
03_01_0180 + 1456182-1456359,1456444-1456520,1456570-1456692,145... 33 1.1
08_01_0779 - 7553278-7553631,7553765-7553977,7554132-7554617,755... 31 4.6
07_03_0359 - 17201711-17201803,17202185-17202332,17202437-172025... 31 8.0
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272... 31 8.0
03_02_0509 - 9003330-9003446,9003587-9003673,9004113-9004280,900... 31 8.0
>04_04_0838 -
28550036-28550237,28550595-28550676,28550972-28551011,
28551342-28551416,28551448-28551543,28551710-28551805,
28551897-28551974,28552064-28552170,28552450-28552477,
28552777-28552898,28554106-28554172,28554336-28554508,
28554763-28554846,28555616-28555733,28556093-28556164,
28557026-28557118,28557484-28557636,28558000-28558086,
28559436-28559528,28560416-28560643,28561106-28561207,
28561390-28561596,28561798-28561846,28562385-28562537,
28562649-28562712,28562905-28563175,28564008-28564072,
28564184-28564337
Length = 1052
Score = 37.5 bits (83), Expect = 0.070
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 534 ADGEMLPRQLNEDHVIN--VNIERNLAHKSAYISGYMSKSTISSWLTALQESTLYRLYEI 591
A G LP+ L+ + I+ I ++ + YI + SK T + + +++S L+ LY
Sbjct: 756 ASGRTLPKNLSSEESIDELFTIFDDVRRTALYIHHWKSKGTRAVFWD-MRDSLLFSLYRA 814
Query: 592 NVDLSRLHPTVPSLDDIKDDPSNRIENISGENAPESEIFASRQHTVIW 639
+V+ +R+ +P++D + D + I + + +F + +IW
Sbjct: 815 SVESARMEMFIPTIDQVLDQVCDLIVDALRDQV-VLRVFQACMEGLIW 861
>10_02_0023 +
4306350-4306908,4308429-4308814,4308917-4308991,
4309330-4309539,4309649-4309961,4310035-4310130,
4310220-4310357,4310436-4310536,4310645-4310712,
4310800-4310849,4311790-4311848,4312399-4312530
Length = 728
Score = 33.5 bits (73), Expect = 1.1
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 12/149 (8%)
Query: 6 EKDQSVLEASGTELLHAQGREIKIEPFTPQFEDDIEIEVKLEEAP-----NISKSTVRSL 60
E D +E G E++ + +K + ED E+ EEAP +++ + S
Sbjct: 36 ESDGMEVEDRG-EVVSQEATAVKPDEAEEPEEDPEEVGEGAEEAPAAGPGDVAAAAAESG 94
Query: 61 PEPLQTPHNNVNVSTILNNYNFKVISSSNDVKEIKIEPITPRYEDDEDENEIEVKFEEEH 120
P ++ + + + V DV E E I P E+DE+ E EV+ +EE
Sbjct: 95 PVAMEAGDGEPALEVAITAHE-PVEEEPKDVMETGEEAIEP--EEDEEPEEAEVEEDEE- 150
Query: 121 NISKAMVRRLQEPLQADHPEELKTCDGIE 149
+ + +EP AD E ++ G E
Sbjct: 151 --PEELEMEEEEPEDADSEESMEEEAGSE 177
>03_01_0180 +
1456182-1456359,1456444-1456520,1456570-1456692,
1456783-1456896,1457580-1457666,1458040-1458179,
1458253-1458340,1459125-1459198,1461147-1461340,
1461430-1461632,1461955-1462001,1462084-1462336,
1462551-1462568
Length = 531
Score = 33.5 bits (73), Expect = 1.1
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Query: 8 DQSVLEASGTELLHAQGREIKIEPFTPQFEDDIEIEVKLEEAPNISKSTVRSLPEPLQTP 67
D++ + E+ ++ + P + F DI ++ L I +P TP
Sbjct: 203 DETTIITGALEMTQKTAKDA-MTPISETFSLDINAKLDLHTMGMIMTKGHSRVPIYSGTP 261
Query: 68 HNNVNVSTILNNYNFKVISSSNDVKEIKIEPITPRYEDDEDENEIEVKFEEEHNISKAMV 127
+N + + + N + ++ + I I PR DD +I +F++ H+ +V
Sbjct: 262 NNIIGLILVKNLITCQP-EDEVPIRNVTIRKI-PRVSDDLPLYDILNEFQKGHSHMAVVV 319
Query: 128 RRLQEP 133
RR++EP
Sbjct: 320 RRIKEP 325
>08_01_0779 -
7553278-7553631,7553765-7553977,7554132-7554617,
7554729-7554796,7554918-7555215,7555288-7555364,
7555703-7555874,7555951-7556021,7557371-7557392
Length = 586
Score = 31.5 bits (68), Expect = 4.6
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 69 NNVNVSTILNNYNFKVISSSNDVKEIKIE---PITPRYEDDEDENEIEVKFEEEHNISKA 125
NN+ IL N + K +++S D +E+K+E + +++ E E I F+ KA
Sbjct: 445 NNLLRHIILENNDNKPVTNSRDTQEVKLEHGLQMLTIFKNHESETNILEDFDFYEQREKA 504
Query: 126 MV--RRLQEPL--QADHPEELKTCD----GIEDCFGARLKTTDLSRTE 165
+ RR Q+P + P E K I D FG +T L TE
Sbjct: 505 LQENRRQQQPASPELQKPAENKALGELMAHISDTFG---QTVQLKETE 549
>07_03_0359 -
17201711-17201803,17202185-17202332,17202437-17202574,
17204331-17204416,17205233-17205283,17205774-17205858,
17205930-17206081
Length = 250
Score = 30.7 bits (66), Expect = 8.0
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 924 SIYANQIH-KHSFTCTKRGETACRFGVPYWPMPTTRVLVPMPQADGRGQNLEEKAKELRA 982
S+YA H HSFTC T+ +P+ PM T + +P + GR ++ + ++ A
Sbjct: 40 SLYATYRHWHHSFTCFL---TSFTDEIPHRPMLETEMDLPRAEHVGRSEDSTKTSRPSYA 96
Query: 983 SLDT 986
+DT
Sbjct: 97 VIDT 100
>06_03_0434 +
20725996-20726026,20726300-20726947,20727168-20727230,
20727300-20727458,20727750-20728247,20729068-20729321,
20729448-20729829,20729938-20730204,20730530-20730789
Length = 853
Score = 30.7 bits (66), Expect = 8.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 867 VKDHFLRIEFQERGRPRARILLWLNDDPRETVSESMPRTV 906
VK + +EFQ+RG P A LL +N+ + T E R +
Sbjct: 595 VKAYTYVVEFQKRGLPHAHFLLIMNEKYKITCPEQYDRII 634
>03_02_0509 -
9003330-9003446,9003587-9003673,9004113-9004280,
9004835-9004957,9005081-9005170,9005275-9005295
Length = 201
Score = 30.7 bits (66), Expect = 8.0
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 106 DEDENEIEVKFEEEHNISKAMVRRLQEPLQADHPEELKTCDGIEDCFGARLKTTDLSRTE 165
D E EI+ K EE I++ + ++ ++ + E+ K DG D +RL R +
Sbjct: 124 DAKEAEIQQKKAEESRIAQEIQKKREKDGREQELEKQKLMDG--DAGNSRLGP---DRAD 178
Query: 166 LEAERELAKTHSKYT 180
E E+EL HS T
Sbjct: 179 AEEEKELDSKHSSRT 193
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,200,674
Number of Sequences: 37544
Number of extensions: 1369714
Number of successful extensions: 3679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3678
Number of HSP's gapped (non-prelim): 10
length of query: 1293
length of database: 14,793,348
effective HSP length: 91
effective length of query: 1202
effective length of database: 11,376,844
effective search space: 13674966488
effective search space used: 13674966488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 66 (30.7 bits)
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