Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001776-TA|BGIBMGA001776-PA|IPR007087|Zinc finger,
C2H2-type
(1293 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003137-3|AAB93640.1| 625|Caenorhabditis elegans Hypothetical ... 37 0.11
U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical pr... 33 1.0
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 33 1.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 33 1.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 33 1.0
U56965-2|AAB52667.3| 581|Caenorhabditis elegans Hypothetical pr... 32 2.3
AC006776-4|AAF60628.2| 354|Caenorhabditis elegans Hypothetical ... 32 3.1
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ... 31 4.1
AF003130-3|AAB54123.1| 849|Caenorhabditis elegans Hypothetical ... 31 4.1
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 31 5.4
U00032-11|AAA50630.1| 189|Caenorhabditis elegans Hypothetical p... 31 5.4
AL023828-22|CAA19467.2| 272|Caenorhabditis elegans Hypothetical... 31 5.4
AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical ... 31 5.4
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 30 9.4
AL117195-14|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 30 9.4
>AF003137-3|AAB93640.1| 625|Caenorhabditis elegans Hypothetical
protein C27A12.2 protein.
Length = 625
Score = 36.7 bits (81), Expect = 0.11
Identities = 46/231 (19%), Positives = 82/231 (35%), Gaps = 12/231 (5%)
Query: 18 ELLHAQGREIKIEPFTPQFEDDIEIEVKLEEAPNISKSTVRSLPEPLQTPHNNVNVSTIL 77
E LH + E P P + E E+ + + S +SL E +Q + + N+ ++
Sbjct: 282 ENLHFEHVEAAPGPSEPHLQVVAEGEILYDGEEIVDISNGKSLKEEIQ--NGDANIYGMI 339
Query: 78 NNYNFKVISSSNDVKE-----IKIEPITPRYEDDEDENEIEVKFEEEHNISKAMVRRLQE 132
+ +V N+ +E I + P P+ + E I A + L E
Sbjct: 340 QDLEEEVEDIGNEDEERERVRIMVNPNPPKRGTKSLRDHHEATAATMEMIVDASILELAE 399
Query: 133 PLQADHPEELKTCDGIEDCFGARLKTTD--LSRTELEAERELAKTHSKYTAKLYKCEKCL 190
P + H ++ G R + D + + A H + L+KCE C
Sbjct: 400 PSR--HLKQGYPPISKRKNTGKRAENLDWIIDAVAKGVDVSEASPHHRKKPTLHKCEYC- 456
Query: 191 VSYDXXXXXXXXXXXXXXXXNLYKCDVCYCTYDTELKLETHARRHYLRTAY 241
D +KC++C + + + H RRH+ + Y
Sbjct: 457 GRVDKYPSKIRAHMRTHTGEKPFKCEICGMAFSQKTPMRLHLRRHFDQKPY 507
>U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical
protein ZC449.5 protein.
Length = 493
Score = 33.5 bits (73), Expect = 1.0
Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 7/134 (5%)
Query: 249 SDEPMDYTDPPLPSKSNILK-EAQDAVAFTSFDEPSTIA---APKSKAQKQREYRXXXXX 304
+D P +P KS K E++ AV T+ P+ A P S+ K E
Sbjct: 103 TDAPKTTEEPASTKKSEKKKTESKKAVKTTTTAAPAESAETETPSSEENKTTEEESGNVS 162
Query: 305 XXXXXXXXXXKKSDAERQR-NXXXXXXXXXXXISGSLESNT--APISRSGAKSNDLQTGT 361
+ S E Q S E+ T + S + +S + +T T
Sbjct: 163 AEEVTTTSSTEVSVEEEQTVKSTEASTEEEKSTEASEEATTTSSETSETTEESEEEETTT 222
Query: 362 KPEPTHKHSRTSAS 375
KP THK S+T+ +
Sbjct: 223 KPAKTHKSSKTTTT 236
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 33.5 bits (73), Expect = 1.0
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 30 EPFTPQFEDDIEIEVKLEEAPNISKSTVRSLP-EPLQTPHNNVNVSTILNNYNFKVISSS 88
EP + + + +E +SK RS P EP Q T L N V+ ++
Sbjct: 3616 EPIQEEVPKEATLSEPTQEQSEVSK---RSEPVEPTQIQQAASEEETPLEETNETVVQTN 3672
Query: 89 NDVKEIKIEPITPRYEDDEDENEIEVKFEE-EH-NISKAMVRRLQEPLQADHPEELK 143
DVKE ++ P + D ++++V E H I +A++ +P Q D +E K
Sbjct: 3673 EDVKEAEV-PENAEAQKVVDSSDLQVAASEIAHLAIDEAVLETSNQPSQFDSLQEQK 3728
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 33.5 bits (73), Expect = 1.0
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 30 EPFTPQFEDDIEIEVKLEEAPNISKSTVRSLP-EPLQTPHNNVNVSTILNNYNFKVISSS 88
EP + + + +E +SK RS P EP Q T L N V+ ++
Sbjct: 3616 EPIQEEVPKEATLSEPTQEQSEVSK---RSEPVEPTQIQQAASEEETPLEETNETVVQTN 3672
Query: 89 NDVKEIKIEPITPRYEDDEDENEIEVKFEE-EH-NISKAMVRRLQEPLQADHPEELK 143
DVKE ++ P + D ++++V E H I +A++ +P Q D +E K
Sbjct: 3673 EDVKEAEV-PENAEAQKVVDSSDLQVAASEIAHLAIDEAVLETSNQPSQFDSLQEQK 3728
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 33.5 bits (73), Expect = 1.0
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 30 EPFTPQFEDDIEIEVKLEEAPNISKSTVRSLP-EPLQTPHNNVNVSTILNNYNFKVISSS 88
EP + + + +E +SK RS P EP Q T L N V+ ++
Sbjct: 3616 EPIQEEVPKEATLSEPTQEQSEVSK---RSEPVEPTQIQQAASEEETPLEETNETVVQTN 3672
Query: 89 NDVKEIKIEPITPRYEDDEDENEIEVKFEE-EH-NISKAMVRRLQEPLQADHPEELK 143
DVKE ++ P + D ++++V E H I +A++ +P Q D +E K
Sbjct: 3673 EDVKEAEV-PENAEAQKVVDSSDLQVAASEIAHLAIDEAVLETSNQPSQFDSLQEQK 3728
>U56965-2|AAB52667.3| 581|Caenorhabditis elegans Hypothetical
protein C15H9.5 protein.
Length = 581
Score = 32.3 bits (70), Expect = 2.3
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 78 NNYNFKVISSSNDVKEIKIEPITPRYEDDEDENEIEVKF----EEEHNISKAMVRRLQEP 133
N++N+ +++S D +++ P R + + +E EI+ +F + N+S+ +V
Sbjct: 498 NSHNYLLLNSDFDSYDVETSPKEDRKDKENNEQEIDEQFLTKAYSDANVSRRLVSDESSN 557
Query: 134 LQADHPEE 141
Q D+P +
Sbjct: 558 NQTDYPHQ 565
>AC006776-4|AAF60628.2| 354|Caenorhabditis elegans Hypothetical
protein Y46H3C.6 protein.
Length = 354
Score = 31.9 bits (69), Expect = 3.1
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 23 QGREIKIE-----PFTPQFEDDIEIEVKLEEAPNISKSTVRSLPEPLQTP---HNNVNVS 74
Q RE+KI+ PFT + E D + + K +P LQ P V
Sbjct: 8 QARELKIDGGDGNPFTLEREPDSRTVITIAHYRTTDKPEPLVMPLSLQAPGAGRGGRCVE 67
Query: 75 TILNNYNFKVISSSNDVKEIKIEPITPRYEDDEDENEIEVKFEEE 119
++ + +V D KE + E P ED+ED+ E+E + EEE
Sbjct: 68 DEEDDADDEVKEEPEDEKEPEDEE-EPA-EDEEDDEEVEERLEEE 110
>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
protein ZC132.5 protein.
Length = 1277
Score = 31.5 bits (68), Expect = 4.1
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 19 LLHAQGREIK--IEPFTPQFEDDIEIEVKLEEAPNISKSTVRSLPEPLQ--TPHNNVNVS 74
LL A GR I+ I TP ++I+ E ++A N+ + + ++PE +Q + ++
Sbjct: 1120 LLTATGRTIRRPINLITPLEIEEIQHETDAQDAENVMEDNMENIPEKIQEVVANGQSEIN 1179
Query: 75 TILNNYNFKVISSSNDVKEIKIEPITPRYEDDEDENEIE-VKFEEEHNISKAMVRRL 130
T ++ N + K I E E D+D N+ + V + +I + M + L
Sbjct: 1180 TEIDQPNQNRRYNLRKKKTINYE------EKDDDNNQAQTVSRSQTWDIGRTMPKLL 1230
>AF003130-3|AAB54123.1| 849|Caenorhabditis elegans Hypothetical
protein F55A12.5 protein.
Length = 849
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 84 VISSSNDVKEIKIEPITPRYEDDEDENEIEVKFEEEHNI 122
VISS ++ +E + E YEDDEDE+E + EEE+ +
Sbjct: 668 VISSESEEEEYEEEDEYEEYEDDEDEDEY-YEEEEENEV 705
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 31.1 bits (67), Expect = 5.4
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 101 PRYEDDEDENEIEVKFEEEHNISKAMVRRLQEPLQADHPEELKTCDGIEDCFGARLKTTD 160
PR DDED+ E++ F ++ K +E + D EEL D R D
Sbjct: 844 PRSLDDEDKVELDKNFADKKEKKKGKWNEDEEDIFEDRKEELPKESDRRDRKDRRHDDED 903
Query: 161 LSRTELEAERELAKTHSKYTAKLYKCEKCLVSYD 194
R E ER+ K + K K ++ +YD
Sbjct: 904 -DRKERRHERDSQKIDEQDRKKERKRDRETEAYD 936
>U00032-11|AAA50630.1| 189|Caenorhabditis elegans Hypothetical
protein F37A4.2 protein.
Length = 189
Score = 31.1 bits (67), Expect = 5.4
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 52 ISKSTVRSLPEPLQTPHNNVNVSTILNNYNFKVISSSNDVKEIK---IEPITPRYE-DDE 107
I K T+R+ EPL+ N V S + F + ++ ++ + I+ + + E DD
Sbjct: 40 IKKETLRAPKEPLEFVRNVVGSSAAAGSAEFHIYRNNRRKEQNRLDYIDAVAKKEELDDA 99
Query: 108 DENEIE-VKFEEEHNISKAMVRRLQEPLQA 136
+++E ++ EEE +K +RL++ A
Sbjct: 100 YRHKVEKLEKEEESKTAKKRAKRLRQKAAA 129
>AL023828-22|CAA19467.2| 272|Caenorhabditis elegans Hypothetical
protein Y17G7B.19 protein.
Length = 272
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 40 IEIEVKLEEAPNISKSTVRSLPEPLQTPHNNVNVSTILNNYNFKVISSSNDVK 92
+E E+AP + P+ L T ++ NV+ IL N FK ++N+VK
Sbjct: 41 VEANSLKEQAPCLKDEECDLFPDFLGTCVHHQNVTNILENRRFKYFPTNNNVK 93
>AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical
protein R11E3.4 protein.
Length = 747
Score = 31.1 bits (67), Expect = 5.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 463 TCKRSLNKKSMPPLAKSMDSHIQTNRQLCHLGSHQRTTD 501
TC + +NK + +A MD+H+ T R L ++ H+ D
Sbjct: 195 TCGKLINKTVLNTMADMMDNHMATTRLLWNMPRHEFPVD 233
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 30.3 bits (65), Expect = 9.4
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 114 VKFEEEHNISKAMVRRLQEPLQADHPEELKTC-DGIEDCFGARLKTTDLSRTELEAEREL 172
+K +EE NI +R Q+ ++ H E+K+ D +E TT + +L+ ER
Sbjct: 53 LKNQEEQNILNEKLRNEQKIIKLKHNTEMKSMRDKLETL------TTAQAAQKLDFERHF 106
Query: 173 AKTHSKYTAKLYKCEKCL--VSYD 194
++AK+ K E+ L + YD
Sbjct: 107 EMMRQSHSAKIVKMERDLRNMKYD 130
>AL117195-14|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18 protein.
Length = 1456
Score = 30.3 bits (65), Expect = 9.4
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 336 ISGSLESNTAPISRSGAKSNDLQTGTKPEPTHKHSRTSASEPGPITSDQIVIEQTQSTWK 395
+ GS S + +S +GA Q P+P++ S++S S+P Q + +Q+T++
Sbjct: 1288 LRGSQNSMASGLSSTGAPQQQQQQAP-PQPSYLRSQSSQSQPQQQQQQQASMSMSQATYQ 1346
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.131 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,275,460
Number of Sequences: 27539
Number of extensions: 1280639
Number of successful extensions: 4519
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4487
Number of HSP's gapped (non-prelim): 44
length of query: 1293
length of database: 12,573,161
effective HSP length: 90
effective length of query: 1203
effective length of database: 10,094,651
effective search space: 12143865153
effective search space used: 12143865153
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)
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