Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001776-TA|BGIBMGA001776-PA|IPR007087|Zinc finger,
C2H2-type
(1293 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05080.1 68415.m00530 hypothetical protein low similarity to ... 35 0.31
At1g54430.1 68414.m06209 hypothetical protein 35 0.41
At5g50830.1 68418.m06297 expressed protein 34 0.71
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 32 2.2
At5g46020.1 68418.m05659 expressed protein 32 2.2
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ... 32 2.2
At5g06670.1 68418.m00753 kinesin motor protein-related 31 3.8
At3g25840.1 68416.m03219 protein kinase family protein contains ... 31 3.8
At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putati... 31 3.8
At2g32440.1 68415.m03963 ent-kaurenoic acid hydroxylase, putativ... 31 3.8
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 31 3.8
At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATP... 31 5.0
At4g35940.1 68417.m05113 expressed protein 31 6.6
At3g30560.1 68416.m03867 hypothetical protein 31 6.6
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 31 6.6
At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger) fa... 31 6.6
At2g20970.1 68415.m02481 hypothetical protein 31 6.6
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 31 6.6
At1g22970.1 68414.m02870 expressed protein 30 8.8
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 30 8.8
>At2g05080.1 68415.m00530 hypothetical protein low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 1238
Score = 35.1 bits (77), Expect = 0.31
Identities = 48/235 (20%), Positives = 96/235 (40%), Gaps = 17/235 (7%)
Query: 874 IEFQERGRPRARILLWLNDDPRETVSESMPRTV--DLVEKLSSVARDDVPNDSIYANQIH 931
IEFQ+RG P A IL+WL+ + T +E + + + ++ +KL +V + +
Sbjct: 366 IEFQKRGLPHAHILIWLDSKCKLTRAEHIDKAISAEIPDKLKDPELFEVIKEMMVHGPCG 425
Query: 932 KHSFTCTKRGETACRFGVPYWPMPTTRVLVPMPQADGRGQNLEEKAKELRASLDT----- 986
+ C C P +P T ++ R + +++ ++ D
Sbjct: 426 VVNPKCPCMENGKCSKFYPKDHVPKT-IIDKEGFPIYRRRRIDDFVQKKDFKCDNRYVIP 484
Query: 987 FNPYLAGEVNSKIDIQFILDEHSCADYVVEYINRSA-RGMGDLRRELTTMMQEHPEQDYT 1045
+N L+ + I++++ ++ Y+ +YI++ R + L + +E +Q
Sbjct: 485 YNRSLSLRYRAHINVEW-CNQSGSVKYIFKYIHKGPDRVTVVVGSSLNSKNKEKGKQKVN 543
Query: 1046 GQLKALSVKMLNAVE-------TSAQEAAWYLLRQRMSEASRQIVYIPTVWPAER 1093
K N VE SA EAAW +L+ + S ++ + P E+
Sbjct: 544 ADTDGSEPKKKNEVEDFFNCRYVSACEAAWRILKYPIHYRSTSVMKLSFHLPGEQ 598
>At1g54430.1 68414.m06209 hypothetical protein
Length = 1639
Score = 34.7 bits (76), Expect = 0.41
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 874 IEFQERGRPRARILLWLNDDPRETVSESMPRTVDLVEKLSSVARDDVPNDSIYANQIHKH 933
IEFQ+RG P A ILLWL D + + P +D +D P Q H
Sbjct: 702 IEFQKRGLPHAHILLWLQGD----LKKPTPNDIDKYISAEIPVKDKDPEGHTLVEQHMMH 757
Query: 934 SFTCTKRGETAC 945
R + C
Sbjct: 758 GPCGKDRPSSPC 769
>At5g50830.1 68418.m06297 expressed protein
Length = 281
Score = 33.9 bits (74), Expect = 0.71
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 82 FKVISSSNDVKEIKIEPITPRYEDDEDENEIEVKFEEEHNISKAMVRRLQE 132
++ I S +DVKE+K E + + E+D ++ K EEE +K +V++ +E
Sbjct: 100 YEKIPSKDDVKEVKEEVVVNKQEEDNHHQDVVEKQEEE---NKEVVKKQEE 147
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 32.3 bits (70), Expect = 2.2
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 81 NFKVISSSNDVKEIKIEPITPRYEDDEDENEIEVKFEEEHNISKAMVRRLQEPLQADHPE 140
N K ++ S+D E + E +D+E+E E EV+ EEE N + + E Q E
Sbjct: 518 NKKSVAHSDDESEEEKE------DDEEEEKEQEVEEEEEENENGIPDKSEDEAPQLSESE 571
Query: 141 ELKTCDGIEDCFGARLKTTDLSRTELEAERELAKTHSKYTA 181
E + E+ K SRT + + K+ SK TA
Sbjct: 572 E--NVESEEESEEETKKKKRGSRTSSDKKESAGKSRSKKTA 610
>At5g46020.1 68418.m05659 expressed protein
Length = 164
Score = 32.3 bits (70), Expect = 2.2
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 103 YEDDEDENEIEVKFEEEHNISKAMVRRLQEPLQADHPEELKTCDGIEDCFGARLKTTDLS 162
YE+D +E E EE + + + + ++ D+P ++ A KTT+LS
Sbjct: 41 YEEDVEEESEEESEEESEDEADVKKKGAEAVIEVDNPNRVRQKTLKAKDLDAS-KTTELS 99
Query: 163 RTELEAERELAKTHSKY 179
R E E E E + H +Y
Sbjct: 100 RRERE-ELEKQRAHERY 115
>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 917
Score = 32.3 bits (70), Expect = 2.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 212 LYKCDVCYCTYDTELKLETHARRHY 236
++KCD+C+ + T L H RRHY
Sbjct: 244 IHKCDICHVLFPTGQALGGHKRRHY 268
>At5g06670.1 68418.m00753 kinesin motor protein-related
Length = 992
Score = 31.5 bits (68), Expect = 3.8
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 47 EEAPNISKSTVRSLPEPLQTPHNNV-NVSTILNNYNFKVISSSNDVKEIK--IEPITPRY 103
EE N K R+ +Q N + + +++ Y +++ +++++K I+P++
Sbjct: 379 EETHNTLKFAHRAKHIEIQAAQNKIIDEKSLIKKYQYEIRQLKEELEQLKQGIKPVSQLK 438
Query: 104 E---DDEDENEIEVKFEEEHNISKAMVRRLQ 131
+ DD D ++ K EEE + A++ R+Q
Sbjct: 439 DISGDDIDIVLLKQKLEEEEDAKAALLSRIQ 469
>At3g25840.1 68416.m03219 protein kinase family protein contains
Pfam profile: PF00069 eukaryotic protein kinase domain
Length = 935
Score = 31.5 bits (68), Expect = 3.8
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Query: 603 PSLDDIKDDPSNRIENISGENAPESEIFASRQHTVIWNEEDC--PKIAPGHQATPL--NV 658
P++ I D N+ + GE +P+SE A H I+ E K+ P+ +
Sbjct: 534 PTMSGISDSEKNQAQAGLGEGSPKSERSADMFHDDIFGESPAGIRKVGGKGDGVPMVRSG 593
Query: 659 IYDRHIEELSFPSIYFGEPRSFHVGVPVTPYMVATSEIRRRDRRGATPQKILYVAMKILR 718
++D + + S FGE V T S + R A P + VA+KI+R
Sbjct: 594 LHDNWDDAEGYYSYQFGELLDGRYEVIATHGKGVFSTVVRAKDLKAGPAEPEEVAIKIIR 653
>At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 235
Score = 31.5 bits (68), Expect = 3.8
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 102 RYEDDEDENEIEVKFEEEHNISK-AMVRRLQEPLQADHPEELKTCD 146
R E +E NEI + EEE NI + ++ + L+ D+ +LK D
Sbjct: 18 RQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLKQVD 63
>At2g32440.1 68415.m03963 ent-kaurenoic acid hydroxylase, putative /
cytochrome P450, putative identical to ent-kaurenoic acid
hydroxylase / cytochrome P450 CYP88A (GI:13021856)
[Arabidopsis thaliana]; similar to ent-kaurenoic acid
hydroxylase [Arabidopsis thaliana] GI:13021853
Length = 489
Score = 31.5 bits (68), Expect = 3.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 1004 ILDEHSCADYVVEYINRSARGMGDLRRELTTMMQEHP 1040
+LD+ D ++ Y+N G L T +MQEHP
Sbjct: 283 VLDDEEIIDLLLMYLNAGHESSGHLTMWATILMQEHP 319
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 31.5 bits (68), Expect = 3.8
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 111 EIEVKFEEEHNISKAMVR-RLQEPLQADHPEELKTCDGIEDCFGARLKTTDLSRTELEAE 169
E+E K EEE K M + RL+ + + PE K +G ++ GA L ++L + +A+
Sbjct: 247 EMEKKKEEERERKKKMEKERLERAMNYEEPEWAKAHEGEDE--GAGL--SELEEEDDDAK 302
Query: 170 RELAKTHSKYTAKLYKCEK 188
R+ + + +K +K EK
Sbjct: 303 RKNEQLYCIVCSKKFKSEK 321
>At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATPase
E subunit / vacuolar proton pump E subunit (VATE)
identical to SP|Q39258 Vacuolar ATP synthase subunit E
(EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump
E subunit) {Arabidopsis thaliana}
Length = 230
Score = 31.1 bits (67), Expect = 5.0
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 102 RYEDDEDENEIEVKFEEEHNISK-AMVRRLQEPLQADHPEELKTCD 146
R E +E NEI V EEE NI K +V ++ ++ D+ ++ K D
Sbjct: 18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEKQAD 63
>At4g35940.1 68417.m05113 expressed protein
Length = 451
Score = 30.7 bits (66), Expect = 6.6
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 37 EDDIEIEVKLEEAPNISKSTVRSLPEPLQTPHNNVNVSTILNNYNFKVISSSNDVKEI-K 95
E +E + L+ N + +PL HNN N + ++N+ K I K
Sbjct: 175 EKRVEKQQPLDGRHNNNNEKRIEKQQPLNGRHNNNNEKLMEKQQPLNGRHNNNNEKRIEK 234
Query: 96 IEPITPRYEDDEDENEIEVKFEEEHNISKA-MVRRLQEPLQAD-HPEELKT 144
+P+ R+ + E + E + + HN + + + R++ P++ PE + T
Sbjct: 235 QQPLNGRHNNKEKQKEKQQPLDVRHNNNDSESIIRIRLPIRRQKDPEVMMT 285
>At3g30560.1 68416.m03867 hypothetical protein
Length = 1473
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 874 IEFQERGRPRARILLWLNDDPR 895
IEFQ+RG P A I++W+ DPR
Sbjct: 556 IEFQKRGLPHAHIIVWM--DPR 575
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 30.7 bits (66), Expect = 6.6
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 235 HYLRTAYNHTIADRSDEPMDYTDPPLPSKSNILKEAQDAVAFTSFDEPSTIAAPKS 290
HY T YN D + P+ T+ P K+N +E + F SFD P+ + +S
Sbjct: 78 HY--TFYNELRVDPEEHPVLLTEAPYNPKAN--REKMTQIMFESFDVPAMYVSMQS 129
>At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 237
Score = 30.7 bits (66), Expect = 6.6
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 130 LQEPLQADHPEELKTCDGIEDCFGARLKTTDL-SRTELEAEREL 172
+QEP D EE TCDG++ C + L RT LE L
Sbjct: 194 MQEPPDQDSAEEHDTCDGVDTCVRRCSSCSSLGQRTGLERSLSL 237
>At2g20970.1 68415.m02481 hypothetical protein
Length = 373
Score = 30.7 bits (66), Expect = 6.6
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 1199 DNYKREMVLLYVRFRNEMSEIVDQNKFLQLFDENEDTIMERHRLFETNINIENVVKELEV 1258
DN + + ++ R+E+ VD++ D N+D +L ET + ++ +KE +
Sbjct: 237 DNMRHNVDEIWQELRDELRSKVDEDIKASRQDLNKDVKSVADQLRETYLAVQETIKEAKT 296
Query: 1259 -MTILENDNN 1267
T L N NN
Sbjct: 297 HETYLINQNN 306
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 30.7 bits (66), Expect = 6.6
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 92 KEIKIEPITPRYEDDEDENEIEVKFEEEHNISKAMV 127
KE IEP+ R ++DE E+E++FE+E +A V
Sbjct: 1783 KEESIEPVD-RETSEDDEEELEIEFEDEEEDWEAEV 1817
>At1g22970.1 68414.m02870 expressed protein
Length = 357
Score = 30.3 bits (65), Expect = 8.8
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Query: 896 ETVSESMPRTVDLVEKLSSVARDDVPND-SIYANQIHKHSFTCTKRGETACRFGV-PYWP 953
E VSE++ +L+ ++ + + + P D S + + K C G G Y P
Sbjct: 227 EIVSETIMVIKELIRVITGMIKMENPKDNSGFVESLEKLLKLCQGTGVQIDELGACVYPP 286
Query: 954 MPTTRVLVPMPQADGRGQNLEEKAKELRASLDTFNPYLAGEVNSKIDIQFILDEHSCADY 1013
++ + G E + + L++S D F+ NS ++ LD+ A+
Sbjct: 287 QEMNKMKQTVKVIQGNLDEFETEVERLKSSSDGFSGACGKLRNSLKHMETELDKRCEAEL 346
Query: 1014 VVEYIN 1019
VVE N
Sbjct: 347 VVEMQN 352
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle myosin
II heavy chain (GI:19879404) [Loligo pealei]; ESTs
gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 30.3 bits (65), Expect = 8.8
Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 14/175 (8%)
Query: 891 NDDPRETVSESMPRTVDLVEKLSSVARDDVPNDSIYANQIHKHSFTCTKRGETACRFGVP 950
N T+S +M + DL E L++V ++ Q + T+ E
Sbjct: 270 NSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALH--K 327
Query: 951 YWPMPTTRVLVPMPQADGRGQNLEEKAKELRASLDTFNPYLAGEVNSKIDIQFILDEHSC 1010
+ + + + D ++L EK+K+L + + LA + +Q LD+ S
Sbjct: 328 HSELKVQKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSA 387
Query: 1011 ADYVVEYINRSARGMGDLRRELTTMMQEHPEQDYTGQLKALSVKMLNAVETSAQE 1065
+ + + D +L +QE + Y K +++ LN +T A++
Sbjct: 388 ENEL----------LADTNNQLKIKIQE--LEGYLDSEKETAIEKLNQKDTEAKD 430
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.131 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,249,860
Number of Sequences: 28952
Number of extensions: 1160365
Number of successful extensions: 3702
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3683
Number of HSP's gapped (non-prelim): 36
length of query: 1293
length of database: 12,070,560
effective HSP length: 90
effective length of query: 1203
effective length of database: 9,464,880
effective search space: 11386250640
effective search space used: 11386250640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)
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