Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001775-TA|BGIBMGA001775-PA|IPR007087|Zinc finger,
C2H2-type
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 40 0.003
03_02_0715 + 10621789-10623243,10624074-10625018 34 0.22
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 34 0.22
03_06_0607 + 35037467-35038624 32 0.68
01_06_1284 + 35994595-35995074 32 0.68
11_04_0142 + 14027726-14029081 32 0.90
03_06_0477 + 34210844-34211356 32 0.90
05_06_0027 - 25029725-25030017,25030097-25030211,25030347-250305... 31 1.2
02_04_0316 - 21978330-21979397 31 2.1
01_06_0541 - 30088910-30089107,30089421-30089477,30089563-300897... 31 2.1
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 30 2.7
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 30 2.7
06_03_1478 - 30420097-30420651 30 3.6
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849 30 3.6
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 30 3.6
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148... 30 3.6
01_06_1495 + 37769982-37771496 30 3.6
12_01_0454 + 3580332-3581714 29 4.8
07_01_0713 - 5438005-5438294,5438441-5438567,5438638-5438687,543... 29 4.8
06_02_0105 - 11893666-11895483,11895661-11896422 29 6.3
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 29 6.3
04_03_0086 - 10939951-10939956,10951819-10952340,10952425-109526... 29 6.3
03_02_0375 + 7880543-7880872,7881291-7881365,7881445-7881531,788... 29 6.3
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 29 8.4
06_03_0743 + 24069752-24070483,24071890-24072345 29 8.4
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 40.3 bits (90), Expect = 0.003
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 178 INCSISKKITKSDIVKGILRKDNDSYSDDTE--KEDNQVT--NGCVQDFKDKFEEVKYSE 233
IN +I +K+ S K L K+ S S E K + T N Q K+K ++ E
Sbjct: 1445 ININIKRKLDASAKEKEELTKEKQSLSKQLEDLKSSQKTTTENSNEQAIKEKDFRIQTLE 1504
Query: 234 NELEKIREDKRKHYNFKKIPYKCDSCVLGFMRKENYDL-HIVKKHDQTVGEYV 285
LEK R+D +K F++ K + + M +E + ++KH Q V E +
Sbjct: 1505 KVLEKERDDNKKEKAFRRRNEKVFTTAIQNMNQERKQVEESIEKHRQAVKEVI 1557
>03_02_0715 + 10621789-10623243,10624074-10625018
Length = 799
Score = 33.9 bits (74), Expect = 0.22
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 30 LTRKNMRNSLSKLDVTTTTNFNYELEFDYDPLTNADTDKKSHVKTESVYEITDSIETPYN 89
+ ++ RN KL + + YE + D+DP + + +++ + E+ D E +
Sbjct: 150 MKKRGGRNVEGKLPLERSNRRRYEEDMDFDPDMDEEEEEED---VDFDPEVEDEEEEDFE 206
Query: 90 VANTVNAYAEKVECTAKIKGKKPKTVNKETSNNKFKTTSTLFN-KLGKIKTIKELNSRNK 148
A KV K G++ T+N+ K K++S + + K+G +K + R +
Sbjct: 207 DEEDDELEATKVR--VKNMGRRKSTLNQR--RGKMKSSSKVASRKVGSVKARNAASIRRR 262
Query: 149 QK 150
QK
Sbjct: 263 QK 264
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 33.9 bits (74), Expect = 0.22
Identities = 41/199 (20%), Positives = 86/199 (43%), Gaps = 17/199 (8%)
Query: 203 YSDDTEKEDNQVTNG--CVQDFKDKFEEVKYSENELEKIREDKRKHYNFKKIPYKCDSCV 260
+ ++ +K + +NG V + +E S + +++ + H + + + C
Sbjct: 37 HKEELDKSEIYKSNGEKVVHEGDHTCQECGASFQKPAHLKQHMQSHSDERSFICPLEDCP 96
Query: 261 LGFMRKENYDLHIVKKHDQTVGEYVCPVCQVRFACEASMNKH-KSKH-----FVSYRCRL 314
++RK++ + H++ KH + C +F+ +A+M +H K H S R +
Sbjct: 97 FSYIRKDHLNRHML-KHQGKLFTCSMDGCGRKFSIKANMQRHVKEIHEDETATKSNRQFV 155
Query: 315 CSFE-TSELWSAV----KHDKRKHKFDSNDKIHCAE-CEVVVKTGDELSEHMRLKH-VLF 367
C E ++++ KH++ K D + + C C + L H + H +
Sbjct: 156 CKEEGCNKVFKYASKMKKHEESHVKLDYVEVVCCEPGCMKTFTNVECLRAHNQACHQYVQ 215
Query: 368 CNECGEKFKGKHTLRTHMR 386
C+ CGEK K ++ H+R
Sbjct: 216 CDICGEKHL-KKNIKRHLR 233
Score = 31.9 bits (69), Expect = 0.90
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 14/170 (8%)
Query: 180 CSISKKITKSDIVKGILRKDNDSYSDDTEKEDNQVTNGCVQDFKDKFEEVKYSENELEKI 239
CS+ K I + R + + D+T + N+ C ++ +K KY+ K+
Sbjct: 119 CSMDGCGRKFSIKANMQRHVKEIHEDETATKSNRQFV-CKEEGCNKV--FKYAS----KM 171
Query: 240 REDKRKHYNFKKIPYKCDSCVLGFMRKENYDLHIVKKHDQTVGEYV-CPVCQVRFACEAS 298
++ + H + C C G M K ++ ++ H+Q +YV C +C + + +
Sbjct: 172 KKHEESHVKLDYVEVVC--CEPGCM-KTFTNVECLRAHNQACHQYVQCDICGEKHL-KKN 227
Query: 299 MNKHKSKHF-VSYRCRL-CSFETSELWSAVKHDKRKHKFDSNDKIHCAEC 346
+ +H H V R+ CSFE E + K + KH S+D++ C
Sbjct: 228 IKRHLRAHEEVPSTERIKCSFEGCECSFSNKSNLTKHIKASHDQVKPFAC 277
>03_06_0607 + 35037467-35038624
Length = 385
Score = 32.3 bits (70), Expect = 0.68
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 358 EHMRLKHVLFCNECGEKFKGKHTLRTHMR 386
E + HV FC CG+ FK LR HMR
Sbjct: 156 EEILAPHVHFCGVCGKGFKRDANLRMHMR 184
>01_06_1284 + 35994595-35995074
Length = 159
Score = 32.3 bits (70), Expect = 0.68
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 280 TVGEYVCPVCQVRFACEASMNKHKSKHFVSYRCRLCSFETSELWSAVKHDKRKHKFDSND 339
T G + C C RF ++ H++ H + +L S + +A + D+ +
Sbjct: 31 TEGVFECKTCSKRFPSFQALGGHRTSH-TRLQAKLLSDPAAAAAAAAERDRAR------- 82
Query: 340 KIH-CAECEVVVKTGDELSEHMR 361
+H CA C V G L HMR
Sbjct: 83 -VHECAVCGVEFSMGQALGGHMR 104
>11_04_0142 + 14027726-14029081
Length = 451
Score = 31.9 bits (69), Expect = 0.90
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 284 YVCPV--CQVRFACEASMNKHKSKHFVSYRCRLCSFETSELWSAVKHDKRKHKFDSNDKI 341
Y+C + C F + H + H R + + SE S+ H + K
Sbjct: 222 YMCKMQGCGRAFPTHQGLGGHAAGH--QNRSKAAAAAASEQGSSGAGADGCHGGADSSKH 279
Query: 342 HCAECEVVVKTGDELSEHMR---LKHVLFCNECGEKFKGKH 379
C EC + KTG L HMR K + NE GKH
Sbjct: 280 RCRECGMEWKTGFALGGHMRKHQTKETVTVNEKEPNVAGKH 320
>03_06_0477 + 34210844-34211356
Length = 170
Score = 31.9 bits (69), Expect = 0.90
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 282 GEYVCPVCQVRFACEASMNKHKSKHFVSYRCRLCSFETSELWSAVKHDKRKHKFDSNDKI 341
GE+VC C F ++ H++ H R R + + R + DK
Sbjct: 53 GEFVCKTCSRAFPTFQALGGHRTSHL---RGRSNGLDLGAIGDKAIRLHRAADKEHRDKH 109
Query: 342 HCAECEVVVKTGDELSEHMR 361
C C + + G L HMR
Sbjct: 110 ECHICGLGFEMGQALGGHMR 129
>05_06_0027 -
25029725-25030017,25030097-25030211,25030347-25030504,
25030582-25030682,25030846-25030994,25031089-25031239,
25031329-25031482,25032249-25032321,25032446-25032676
Length = 474
Score = 31.5 bits (68), Expect = 1.2
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 59 DPLTNADTDKKS-HVKTESVYE--ITDSIETPYNVANTVNAYAEKVECTAKIKGKKPKTV 115
D +TNA+ D + + +ES + S T +V + + Y + +K+K K PK +
Sbjct: 372 DSMTNAELDSTNPKLMSESRIKRVARGSGRTMKDVTDMLEEYKRIAKVCSKLKKKLPKNM 431
Query: 116 NKETSNNKFKTTSTLFNKLGK 136
++ NNK T +T+ N + K
Sbjct: 432 DRNVMNNK-DTLNTINNLIPK 451
>02_04_0316 - 21978330-21979397
Length = 355
Score = 30.7 bits (66), Expect = 2.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 363 KHVLFCNECGEKFKGKHTLRTHMR 386
+HV FC+ CG+ F+ LR HMR
Sbjct: 141 EHVHFCDICGKGFRRDANLRMHMR 164
>01_06_0541 -
30088910-30089107,30089421-30089477,30089563-30089721,
30090639-30090777,30090863-30091247,30091612-30091816
Length = 380
Score = 30.7 bits (66), Expect = 2.1
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 195 ILRKDNDSYSDDTEKEDNQVTNGCVQDFKDKFEEVKYSENELEKIREDKRK 245
I K + T ++DN+ G + ++K E+ + + E EK+RE+KRK
Sbjct: 211 IAEKQGEQDDAPTGEKDNK--EGAANEEEEKEEDKEMTLEEFEKLREEKRK 259
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 30.3 bits (65), Expect = 2.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 185 KITKSDIVKGILRKDNDSYSDDTEKEDNQVTNGCVQDFKDKFEEVK 230
K+++ + + +D D Y DD E ED +V DF + +VK
Sbjct: 83 KLSEQEPEDEVEEEDEDEYEDDVEDEDEEVEEDDDNDFMEPALKVK 128
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 30.3 bits (65), Expect = 2.7
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 198 KDNDSYSDDTEKE---DNQVTNGCVQ--DFKDKFEEVKYSENELEKIREDKRK 245
KDN+ +D E+E DN+ + D K+K E+ K ENE EK+ E+++K
Sbjct: 217 KDNEKEKEDKEEETKKDNEKEKEQLMGTDEKEK-EKEKEDENEEEKLEEEEKK 268
>06_03_1478 - 30420097-30420651
Length = 184
Score = 29.9 bits (64), Expect = 3.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 278 DQTVGEYVCPVCQVRFACEASMNKHKSKH 306
D+ G Y CP+C F E +++ H H
Sbjct: 50 DERAGRYPCPLCDRHFPTEKAVHGHMRSH 78
>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
Length = 489
Score = 29.9 bits (64), Expect = 3.6
Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 283 EYVCPVCQVRFACEASMNKHKSKHFVSYRCRLCSFETSELWSAVKHDKR--KHKFDSNDK 340
++ C +CQV E ++N+H ++ +L S +A+K K K K + D
Sbjct: 252 DWSCALCQVSATSEGALNEHLEGK--RHKAKLAHCGAS---NAIKDGKSSLKEKTANKDD 306
Query: 341 IHCAEC--EVVVKTGDELSEHMRLKHVLFCNECGEKFKGKHTLRTHMR 386
++ ++ ++ + E ++ + L+C+ C + T+ H+R
Sbjct: 307 AGPSDAPKKICIQVDGAMHEVVQKSNYLWCDRCKVRCDNNVTMADHLR 354
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 29.9 bits (64), Expect = 3.6
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 92 NTVNAYAEKV--ECTAKIKGKKPKTVNKETSNNKFKTTSTLFNKLGKIKTIKELNSRNKQ 149
+T A AE++ E T K+ + +TV+ S + TS + K + + I E NS++
Sbjct: 130 DTSKAIAERIHKEYTTKVNKHESRTVSNSKSKEQLIRTSNIEEKQKRKQIISENNSKDMT 189
Query: 150 KIDSH 154
++ ++
Sbjct: 190 QVQAN 194
>02_05_1326 -
35712102-35712473,35712608-35712720,35712944-35714857,
35714942-35715135,35715237-35716786,35716946-35717049,
35717258-35717399,35717692-35717910
Length = 1535
Score = 29.9 bits (64), Expect = 3.6
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 36 RNSLSKLDVTTTTNFNYELEFDYDPLTNA-DTDKKSHVKTESV-YEITDSIETPYNVANT 93
+N++ V +T N+ ++ P TN +T + + + + +E++ ++ + +T
Sbjct: 889 KNTMMFQSVNSTENYGNNRSVEFIPETNMIETLEVAGESIDGLLHEVSSNVVNAFVTPDT 948
Query: 94 VNAYAEKVECTAKIKGKKPKTV-NKETSNNKFKTTSTLFN 132
N + + TV N + NN +KTTS+LF+
Sbjct: 949 GNDMGKSDDYLDLPSFSSVHTVQNSKAENNPYKTTSSLFS 988
>01_06_1495 + 37769982-37771496
Length = 504
Score = 29.9 bits (64), Expect = 3.6
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 315 CSFETSELWSAVKHDKRKHKFDSNDKIHCAECEVVVKTGDELSEHMRLKHVLFCNECGEK 374
C E SE HD K D ++ + VV ++ E + H FC CG+
Sbjct: 216 CGGEGSEPIPMEDHDV-KESDDGGERENLPPGSYVVLQLEK--EEILAPHTHFCLICGKG 272
Query: 375 FKGKHTLRTHMR 386
FK LR HMR
Sbjct: 273 FKRDANLRMHMR 284
>12_01_0454 + 3580332-3581714
Length = 460
Score = 29.5 bits (63), Expect = 4.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 364 HVLFCNECGEKFKGKHTLRTHMR 386
H FC CG+ FK LR HMR
Sbjct: 222 HTHFCGICGKGFKRDANLRMHMR 244
>07_01_0713 -
5438005-5438294,5438441-5438567,5438638-5438687,
5439119-5439426,5439581-5439673,5439840-5440197,
5440235-5440267,5440324-5440482,5440734-5440908
Length = 530
Score = 29.5 bits (63), Expect = 4.8
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 99 EKVECTAKIKGKKPKTVNKETSNNK-FKTTSTLFNKLGKIKTIKELNSRNKQK 150
E+ K +GKK K V E NK K T+ N+ G++ I ++S + K
Sbjct: 339 ERFHIALKKEGKKKKPVTDEFEKNKRIKIGGTMPNQQGQLSLINHIDSSDIDK 391
>06_02_0105 - 11893666-11895483,11895661-11896422
Length = 859
Score = 29.1 bits (62), Expect = 6.3
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 60 PLTNADTDKKSHVKTESVYEITDSIETPYNVA----NTVNAYAEKVECTAKIKGKKPKTV 115
PL N D ++ YE S TP V + ++ + E+ ++ K P +
Sbjct: 150 PLHNTGDDAFCSYSVKASYET--SAATPAKVKEKKPHLMHHFNERQMSLRDMRQKAPAPL 207
Query: 116 NKETSNNKFKTTSTLFNKLGKIKTIKELNSR 146
N+ S F+T +T + I+++K SR
Sbjct: 208 NRSNSGKNFRTDNTFVDTTTHIESVKVAASR 238
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 196 LRKDNDSYSDDTEKEDNQVTNGCVQDFKDKFEEVKYSENELEKIRED 242
L D+DS DD +K+ G D + K++E K+S++ L+ R D
Sbjct: 246 LGHDSDSDHDDNKKKKKNSRYGSEDDSEAKYDEKKHSKH-LKNSRHD 291
>04_03_0086 -
10939951-10939956,10951819-10952340,10952425-10952664,
10952932-10952988
Length = 274
Score = 29.1 bits (62), Expect = 6.3
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 64 ADTDKKSHVKTESVYEITDSIETPYNVANTVNAYAEKVECTAKIKGKKPKTVNKETSNNK 123
ADT KK++ + +S+ S+ T VA N A K EC +K K++ N
Sbjct: 140 ADTLKKANAEDKSLIGENKSLRTDLEVA---NKRAAKRECQLAAAEEKIKSLGPPNGNAN 196
Query: 124 FKTTSTLFNKL 134
TL KL
Sbjct: 197 LLRLRTLLPKL 207
>03_02_0375 +
7880543-7880872,7881291-7881365,7881445-7881531,
7881619-7881723,7881806-7881876,7882552-7882840
Length = 318
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 95 NAYAEKVECTAKIKGKKPKTVNKETSNNKFKTTSTLFNKLGKIKTIKE 142
N EK + T K K KK +T + + K + S+ K K+K IK+
Sbjct: 109 NKGKEKQKSTVKAKVKKEETDSDDERKPKAQKKSSAVTKTSKVKKIKD 156
>08_01_0519 -
4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 28.7 bits (61), Expect = 8.4
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 57 DYDPLTNADTDKKSHVKTESVYEITDSIETPYNVANTVNAYAEKV----ECTAKIKGKKP 112
D+D + +T++ + T D +ETP N+VN ++ + TA + P
Sbjct: 245 DHDAMEMDNTNEGNQAATHETTNFKDGVETPEISPNSVNGNSQLIGDGLVVTATTSAESP 304
Query: 113 KTVNKETS 120
T KE +
Sbjct: 305 DTSPKEAA 312
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 28.7 bits (61), Expect = 8.4
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 328 HDKRKHKFDSNDKIHCAEC-EVVVKTGDELSEHMRLKHVLFCNECGEKFKGKHTLRTHMR 386
H KRKH C +C + GD + + +C CG FK K +L+ H+R
Sbjct: 302 HYKRKHGIKP---FMCRKCGKAFAVRGDWRTHEKNCGKLWYC-ACGSDFKHKRSLKDHIR 357
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,194,512
Number of Sequences: 37544
Number of extensions: 405296
Number of successful extensions: 1485
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1461
Number of HSP's gapped (non-prelim): 41
length of query: 387
length of database: 14,793,348
effective HSP length: 83
effective length of query: 304
effective length of database: 11,677,196
effective search space: 3549867584
effective search space used: 3549867584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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