Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001774-TA|BGIBMGA001774-PA|undefined
         (57 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|...    27   0.22 
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    23   3.7  
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    23   3.7  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    23   4.8  

>SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 150

 Score = 27.5 bits (58), Expect = 0.22
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 22 GHHVSLHRHTARGCHTAMGCHT 43
          GHHV  H  + R  H +MG H+
Sbjct: 16 GHHVDKHSFSGRQRHPSMGVHS 37


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 577

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 35 CHTAMGCHTATGCH 48
          C T +GCHT   C+
Sbjct: 2  CETPIGCHTPRRCN 15



 Score = 22.6 bits (46), Expect = 6.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 41 CHTATGCHTATGCH 54
          C T  GCHT   C+
Sbjct: 2  CETPIGCHTPRRCN 15


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 19  DEFGHHVSLHRHTARGCHTAMGCHT 43
           ++FG  +S H     G     GCHT
Sbjct: 231 EDFGVKISFHPKPILGDWNGAGCHT 255


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 18  HDEFGHHVSLHRHTARGCHTA 38
           +DEFG  + L++ T RG   A
Sbjct: 311 NDEFGRQLILYKRTERGAGLA 331


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.132    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,356
Number of Sequences: 5004
Number of extensions: 6537
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 57
length of database: 2,362,478
effective HSP length: 38
effective length of query: 19
effective length of database: 2,172,326
effective search space: 41274194
effective search space used: 41274194
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)