GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001774-TA|BGIBMGA001774-PA|undefined
         (57 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   1.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   2.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     19   3.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    19   3.9  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    19   3.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           19   3.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    19   3.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    18   6.9  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 1.3
 Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)

Query: 12  PKACPGHDEFGHHVSLHRHTARG 34
           PK CP   E+ HH+  H     G
Sbjct: 234 PK-CPFITEYKHHLEYHLRNHAG 255


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 19.8 bits (39), Expect = 2.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 41  CHTATGCHTATGC 53
           C  +TG   ATGC
Sbjct: 922 CAGSTGTRRATGC 934


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed
          protein.
          Length = 283

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 16 PGHDEFGHHVSLHRHTARGCH 36
          PG D FG+H    +    G H
Sbjct: 45 PGGDFFGNHHIQQQQLQYGYH 65


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription
          factor Deformed protein.
          Length = 412

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 16 PGHDEFGHHVSLHRHTARGCH 36
          PG D FG+H    +    G H
Sbjct: 45 PGGDFFGNHHIQQQQLQYGYH 65


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 6/17 (35%), Positives = 8/17 (47%)

Query: 35  CHTAMGCHTATGCHTAT 51
           CH  + C +A   H  T
Sbjct: 140 CHRVLSCKSALQMHYRT 156


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 16 PGHDEFGHHVSLHRHTARGCH 36
          PG D FG+H    +    G H
Sbjct: 45 PGGDFFGNHHIQQQQLQYGYH 65


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
          transcription factor TcDfd1 protein.
          Length = 126

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 16 PGHDEFGHHVSLHRHTARGCH 36
          PG D FG+H    +    G H
Sbjct: 45 PGGDFFGNHHIQQQQLQYGYH 65


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 18.2 bits (35), Expect = 6.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 20   EFGHHVSLHRHTAR 33
            +FG   SLH H ++
Sbjct: 1300 DFGKLCSLHHHLSK 1313


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.132    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,748
Number of Sequences: 317
Number of extensions: 429
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 57
length of database: 114,650
effective HSP length: 37
effective length of query: 20
effective length of database: 102,921
effective search space:  2058420
effective search space used:  2058420
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.8 bits)
S2: 34 (17.8 bits)