GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001774-TA|BGIBMGA001774-PA|undefined
         (57 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040...    27   1.9  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    26   4.5  
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280...    26   4.5  
08_02_1624 - 28334067-28335851                                         25   7.8  

>10_08_0180 +
           15502809-15503312,15503399-15503454,15503934-15504053,
           15504190-15504260,15504603-15504696,15504772-15504978,
           15505406-15505657,15505781-15505889,15506112-15506179,
           15506278-15506347,15506429-15506503,15506600-15506691,
           15506779-15506860
          Length = 599

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 30  HTARGCHTAMGCHTATGCHTATGCHT 55
           H++ G H A G   A  C T  GC T
Sbjct: 148 HSSPGLHAAAGSGLAEECSTLGGCRT 173


>06_03_0099 +
          16633928-16638213,16638299-16638386,16638823-16638950,
          16640008-16640278
          Length = 1590

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 7  ITAQKPKACPGHDEFGHHVSLHRHTARG-CH 36
          + A KP +C  H  + HH   H H   G CH
Sbjct: 12 LRAAKPSSC-AHSTYHHHHHHHHHGDGGDCH 41


>03_01_0359 -
           2805094-2805175,2805256-2805347,2805443-2805517,
           2805582-2805675,2805769-2805872,2806777-2806885,
           2807397-2807609,2808170-2808289,2809060-2809115,
           2809210-2809287,2809374-2809733
          Length = 460

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 30  HTARGCHTAMGCHTATGCHTATGCHT 55
           H++ G H A G   A  C T  GC T
Sbjct: 126 HSSPGLHAAAGPGLAEECTTLGGCRT 151


>08_02_1624 - 28334067-28335851
          Length = 594

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 27  LHRHTARGCHTAMGCHTATGC 47
           L R T RGCH A  C +   C
Sbjct: 376 LKRQTQRGCHCAELCGSRCSC 396


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.132    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,970
Number of Sequences: 37544
Number of extensions: 60953
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 7
length of query: 57
length of database: 14,793,348
effective HSP length: 37
effective length of query: 20
effective length of database: 13,404,220
effective search space: 268084400
effective search space used: 268084400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)