GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001774-TA|BGIBMGA001774-PA|undefined
         (57 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical ...    28   0.90 
AF039040-1|AAB94184.1|  553|Caenorhabditis elegans Hypothetical ...    28   0.90 
U70845-2|AAB09100.1|  102|Caenorhabditis elegans Hypothetical pr...    26   3.6  
U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical pr...    25   6.4  

>AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical
          protein T22B11.4b protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 14 ACPGHDEFGHHVSLHRHTARGCHTAMGCHTATGCHT-ATGCHT 55
          AC    E G+ V L    +R   TA GC   T  HT A  CHT
Sbjct: 59 ACSQCTENGYSVCLRPKDSRASRTAGGC---TCAHTLAANCHT 98


>AF039040-1|AAB94184.1|  553|Caenorhabditis elegans Hypothetical
          protein T22B11.4a protein.
          Length = 553

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 14 ACPGHDEFGHHVSLHRHTARGCHTAMGCHTATGCHT-ATGCHT 55
          AC    E G+ V L    +R   TA GC   T  HT A  CHT
Sbjct: 59 ACSQCTENGYSVCLRPKDSRASRTAGGC---TCAHTLAANCHT 98


>U70845-2|AAB09100.1|  102|Caenorhabditis elegans Hypothetical
          protein F22H10.2 protein.
          Length = 102

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 18 HDEFGHHVSLHRHTARGCHTAMGCHTATGCH 48
          H+  GHH   H H   G    +G H  TG H
Sbjct: 52 HNNGGHHHGHHHHHHHGLLHGLG-HALTGGH 81


>U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical
           protein C46G7.3 protein.
          Length = 715

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 29  RHTARGCHTAMGCHTATGCHTATGC 53
           RH++  C++ + C   +G H   GC
Sbjct: 657 RHSSSMCYSTLKCTYCSGRHHPAGC 681


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.132    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,503,078
Number of Sequences: 27539
Number of extensions: 43626
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 4
length of query: 57
length of database: 12,573,161
effective HSP length: 38
effective length of query: 19
effective length of database: 11,526,679
effective search space: 219006901
effective search space used: 219006901
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)