Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001773-TA|BGIBMGA001773-PA|IPR004097|DHHA2
         (329 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     28   0.097
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.52 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.8  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   6.4  

>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 28.3 bits (60), Expect = 0.097
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 211 EDEEMIDLLERVLMIENPIDERQR-VLDELTKAKSDVSKLTASQLLRKDVKIVEDVL 266
           E  ++ ++ E VL     I E  R +LDE  + KSD+++L  S+  +     +E++L
Sbjct: 134 EHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLASFMENLL 190


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 211 EDEEMIDLLERVLMIENPIDERQR-VLDELTKAKSDVSKLTASQ 253
           E  ++ ++ E VL     I E  R +LDE  + KSD+++L  S+
Sbjct: 428 EHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSK 471


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 75  EVMYLFNKLGITEGDLIFRNDYDLCSLLRDSKCNVVLVDHHVLAANDVFLSA 126
           E+  + ++L   E +    ND+   +++ D  C ++     ++A   V LSA
Sbjct: 498 EIKIITDQLKSEELNAKVTNDWKFAAMVIDRMCLIIFTLFTIIATIAVLLSA 549


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 43  KVCTKDKRGASSKDDIFIPILNMVRQDFALKTEVMYLFNKLGI-TEGDLIFRNDYDLCSL 101
           ++ T DK+G++   DI  P+     +++    +++   NKL I T G  I    ++   L
Sbjct: 232 QLSTTDKKGSAIDLDIGPPLHADQAEEYKKIQQILIRMNKLCIQTIGGQIKPRKHEQ-RL 290

Query: 102 LRDSKCNVVLVD 113
           LR+   + V++D
Sbjct: 291 LRNVGVHTVVLD 302


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,933
Number of Sequences: 429
Number of extensions: 4203
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 329
length of database: 140,377
effective HSP length: 58
effective length of query: 271
effective length of database: 115,495
effective search space: 31299145
effective search space used: 31299145
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)