GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001773-TA|BGIBMGA001773-PA|IPR004097|DHHA2
         (329 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    34   0.005
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    27   0.72 
AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    26   1.7  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   2.2  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   5.1  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   5.1  
AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.          24   6.8  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   8.9  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    23   8.9  
AJ000502-1|CAA04136.1|  299|Anopheles gambiae iron regulatory pr...    23   8.9  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 34.3 bits (75), Expect = 0.005
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 211 EDEEMIDLLERVLMIENPIDERQRVLDELTKAKSDV-SKLTASQLLRKDVKIVEDVLIPS 269
           E++ +++L +     +  I+E +  ++ LT+ K++V +KLTA+    KD      VL+  
Sbjct: 409 EEKRLLELQDVPKKNKKEIEESEAKIESLTRQKTEVEAKLTANLATLKD---ETKVLLEE 465

Query: 270 FPMLVEEFLRLDDAVDAVKEVLSQRE 295
              L  E + L  AVD  K  LS  E
Sbjct: 466 KEKLQTELIELKRAVDESKSALSIAE 491


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 0.72
 Identities = 10/42 (23%), Positives = 22/42 (52%)

Query: 178 QFFKDHMPCSQMLYSTIILDTVNFSKEFNKGTPEDEEMIDLL 219
           Q +  H   + + + T + D   + +E +   P+DEE++D +
Sbjct: 324 QQYHSHPHHTPVQFKTELHDNTQYDEELSPQNPDDEELLDYI 365


>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
            symporter protein.
          Length = 1127

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 231  ERQRVLDELTKAKSDVSKLTASQLLRKDVKIVEDVLIPSFPMLVEEFLRLDDAVDA 286
            E++ +   L K + D S L   QLL    K     +   F  L++EF   DDA DA
Sbjct: 989  EQRNMASLLAKFRIDYSDL---QLLPDVTKKPNQEMADFFKGLIKEFTAKDDAADA 1041


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 213  EEMIDLLERVLMIENPIDERQRVLDELT-KAKSDVSKLTASQLLRKDVKIV-EDVLIPSF 270
            +E+   L+ +  I+ P  +  + LD +T K +S   +  A++   K  K   E V     
Sbjct: 1008 KELQSKLDTLEKIQTPNMKAMQKLDRVTEKIQSTNEEFEAARKKAKKAKAAFEKVKNERC 1067

Query: 271  PMLVEEFLRLDDAVDAVKEVLSQRECLVALL 301
             +       + DA+DA+ + LS+ E   A L
Sbjct: 1068 TLFTNCCNHISDAIDAIYKQLSRNEAAQAYL 1098


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 98  LCSLLRDSKCNVVLVDHHVLAANDV 122
           L SL  +  CNV+  D H+L A+D+
Sbjct: 682 LFSLFINDVCNVLPPDGHLLYADDI 706


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 30  ALYLNWQHNQIKCKVCTKDKRGASSK 55
           AL+L  Q  Q+ C + T D +GA+ K
Sbjct: 927 ALHLAQQDYQLNCNIKTVDGKGATWK 952


>AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.
          Length = 356

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 15/51 (29%), Positives = 22/51 (43%)

Query: 108 NVVLVDHHVLAANDVFLSAFVTEIIDHRPLDKSRWTYKGDTRLIIEIVGSC 158
           +VV  D  +     V L+A V  +  HRP   SRW        I +++  C
Sbjct: 284 DVVQPDPTIEEMRKVRLAARVVCVDQHRPSIPSRWIACDTLHAISKVMKEC 334


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 74  TEVMYLFNKLGITEGDLIFRNDYDLCSLLRDS-KC-NVVLVDHHVLAANDVFLSAFVTEI 131
           T  +Y +N     + D +  ND  + S+  +S  C N + +D  V + +   L AFV  +
Sbjct: 341 TTALYRYN---FAKADYVKLND--MISMFNNSFHCSNFISLDEAVCSFSSFMLQAFVVCV 395

Query: 132 IDHRPLDKSRWTYKGDTRL 150
              RP     W  +   RL
Sbjct: 396 PVQRPKPNPPWADRTLKRL 414


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 168 EMCLLLGKEFQFFKDHMPCSQMLYSTIILDTVNF-SKEFNKG-----TPEDEEMIDLLER 221
           E C  L + F   +D+    Q  Y +     VNF    F  G       + E      E+
Sbjct: 306 ESCYQLARAFHVQRDYDQAFQYYYQSTQFAPVNFVLPHFGLGQMYIYRGDSENAAQCFEK 365

Query: 222 VLMIENPIDERQRVLDELTKAKSDVSK 248
           VL  +    E  ++L  L    S  SK
Sbjct: 366 VLKAQPGNYETMKILGSLYATSSSQSK 392


>AJ000502-1|CAA04136.1|  299|Anopheles gambiae iron regulatory
           protein protein.
          Length = 299

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 282 DAVDAVKEVLSQRECLVALLLGMDLTSGMKRDMAVMSP 319
           D  D  +    +   L+AL+ G D  SG  RD A   P
Sbjct: 161 DVFDCAQRYAGEGTPLIALV-GKDYGSGSSRDWAAKGP 197


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.138    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 321,973
Number of Sequences: 2123
Number of extensions: 12624
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 10
length of query: 329
length of database: 516,269
effective HSP length: 64
effective length of query: 265
effective length of database: 380,397
effective search space: 100805205
effective search space used: 100805205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)