Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001772-TA|BGIBMGA001772-PA|undefined
         (633 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    29   0.15 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.15 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             28   0.27 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   4.4  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   5.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   5.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 114 NRDRQEKTPAPQPSKVNNKQKAVTQPAPQGSNKKEAKKREXXXXXXXXXXVINI-TAHTT 172
           NR         +PS   +  +A+ QP  +  +K+  KK+            I +  A T 
Sbjct: 39  NRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKKKSKTILAVNAEADITLKNAGTP 98

Query: 173 IEAV--NKKVMAASELEKPPSCSIMD 196
            EAV  N  V   S LEK P  + ++
Sbjct: 99  PEAVSYNVAVPTKSILEKKPDVTTVE 124


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 291 ELPESRDGTKMVTLRNPMFHPDLPPVQIS 319
           E+PESRDG   V+L +P   P  P +  +
Sbjct: 122 EVPESRDGPPSVSLSSPPREPGTPRINFT 150


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 0.27
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 114 NRDRQEKTPAPQPSKVNNKQKAVTQPAPQGSNKKEAKKREXXXXXXXXXXVINI-TAHTT 172
           NR         +PS   +  +A+ QP  +  +K+  KK+            I +  A T 
Sbjct: 39  NRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKKKSKTILAVNAEADITLKNAGTP 98

Query: 173 IEAV--NKKVMAASELEKPP 190
            EAV  N  V   S LEK P
Sbjct: 99  PEAVSYNVAVPTKSILEKKP 118


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 503 GSKLNSEISVHHVSDSKFFKTPDGSPVE 530
           GSK   E+ +   SDS    +P  SP+E
Sbjct: 270 GSKKTMELHIKTHSDSSVVGSPRDSPIE 297


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 318 ISAEPQQQKSELRIPEPIPMPPAACQATITPTSNGMYTIR 357
           I+ EP+++K    I   IP+P AA +  I        T+R
Sbjct: 39  ITIEPRRRKFHKPITLTIPVPQAANKGMINQYGGEQPTLR 78


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 395 YSLFRSNDEGRLRSFPRPESRLETSPNPIGTRPESNGASLF 435
           Y+LF  N E   RSF  P S +E S   +    + NG   F
Sbjct: 284 YTLFNENSEAAARSFV-PFS-IERSSQSVAEVMDRNGVLFF 322


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.129    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,108
Number of Sequences: 429
Number of extensions: 7604
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 6
length of query: 633
length of database: 140,377
effective HSP length: 62
effective length of query: 571
effective length of database: 113,779
effective search space: 64967809
effective search space used: 64967809
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)