Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001772-TA|BGIBMGA001772-PA|undefined
(633 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 35 0.19
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family... 31 3.1
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family... 31 3.1
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t... 31 3.1
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 30 4.0
At5g07150.1 68418.m00815 leucine-rich repeat family protein cont... 30 5.3
At5g60840.1 68418.m07632 expressed protein predicted protein, Dr... 29 7.1
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 7.1
At3g22070.1 68416.m02785 proline-rich family protein contains pr... 29 9.3
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 29 9.3
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 34.7 bits (76), Expect = 0.19
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 10/142 (7%)
Query: 311 PDLPPVQISAEPQQQKSELRIPEPIPM--PPAACQATITPTSNGMYTIRNPLMSMMHQQR 368
PDL +I + K + + + IP P + + G ++ +S + QR
Sbjct: 457 PDLEQCRIDSSINTDKKAISLEDRIPRTRPGWDWISDLQSQMQGSSKLQVEDISTLDSQR 516
Query: 369 APHPRPDQLHDRMLSLSSFTQGNDEGYSLFRSNDEGRLRSFPRPESRLETSPNPIGTRPE 428
PHP D +H R+LS S + D + RS+ L R RL PN G +
Sbjct: 517 -PHPEEDIIHSRLLSNLS-SSSLDTNHMASRSS----LPCEVRGSDRLHL-PNGFGEKSM 569
Query: 429 SN-GASLFANQRPDPVRAADYA 449
S+ SLFAN+ + V A+ A
Sbjct: 570 SSVEHSLFANEGRNKVNNAEDA 591
>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
protein
Length = 438
Score = 30.7 bits (66), Expect = 3.1
Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 1/101 (0%)
Query: 289 ATELPESRDGTKMVTLRNPMFHPDLPPVQISAEPQQQKSELRIPEPIPMPPAACQATITP 348
AT +PE + N LP QI+ +PQ Q MPP Q TP
Sbjct: 135 ATPVPEPKKSENTSDAHNQQLALALPH-QIAPQPQVQPQPQPQQHQYYMPPPPTQLQNTP 193
Query: 349 TSNGMYTIRNPLMSMMHQQRAPHPRPDQLHDRMLSLSSFTQ 389
+ T + L + Q + P P H SF Q
Sbjct: 194 APVPVSTPPSQLQAPPAQSQFMPPPPAPSHPSSAQTQSFPQ 234
>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
protein
Length = 496
Score = 30.7 bits (66), Expect = 3.1
Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 1/101 (0%)
Query: 289 ATELPESRDGTKMVTLRNPMFHPDLPPVQISAEPQQQKSELRIPEPIPMPPAACQATITP 348
AT +PE + N LP QI+ +PQ Q MPP Q TP
Sbjct: 193 ATPVPEPKKSENTSDAHNQQLALALPH-QIAPQPQVQPQPQPQQHQYYMPPPPTQLQNTP 251
Query: 349 TSNGMYTIRNPLMSMMHQQRAPHPRPDQLHDRMLSLSSFTQ 389
+ T + L + Q + P P H SF Q
Sbjct: 252 APVPVSTPPSQLQAPPAQSQFMPPPPAPSHPSSAQTQSFPQ 292
>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
hypothetical protein GI:4204272 from [Arabidopsis
thaliana] contains weak PHD zinc finger motifs contains
weak PHD zinc finger motifs DC1 domain, a divergent
protein kinase C domain of unknown function.
Length = 684
Score = 30.7 bits (66), Expect = 3.1
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 314 PPVQISAEPQQQKSELRIPEPIPMPPAACQATITPTSNGMYTIRNPLMSMMHQQRAPHPR 373
PP IS + + P +P P AC +++ T + +Y P M+H+ PR
Sbjct: 238 PPPTISHLKSHEHTLTLFPIRLPSPCDACGLSLSDTIDLIYACL-PCSHMIHRSCIYLPR 296
Query: 374 PDQL--HDRMLSLSSFTQGND 392
Q+ H LSL+S Q D
Sbjct: 297 VIQITRHPHRLSLTSSLQVGD 317
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 30.3 bits (65), Expect = 4.0
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 427 PESNGASLFANQRPDPVRAADYAGPLYTPFGQEDGNLFRNALFTDSRDAP 476
P S+G + FAN + R D++ T Q D NL + LFT AP
Sbjct: 562 PLSHGQTNFANASLEFPRIRDFSSTFETSSTQTDNNLPSSPLFTKGITAP 611
>At5g07150.1 68418.m00815 leucine-rich repeat family protein
contains weak similarity to LRR receptor-like protein
kinase [Nicotiana tabacum] gi|7672732|gb|AAF66615;
contains Pfam PF00560 domain Leucine Rich Repeat
Length = 553
Score = 29.9 bits (64), Expect = 5.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 314 PPVQISAEPQQQKSELRIPEPIPMPPAACQATITP 348
PP I A P + + P P+P PPA TP
Sbjct: 175 PPQNIGASPPTETQVIPNPSPVPPPPAQPPPAQTP 209
>At5g60840.1 68418.m07632 expressed protein predicted protein,
Drosophila melanogaster
Length = 207
Score = 29.5 bits (63), Expect = 7.1
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 311 PDLPPVQISAEPQQQK---SELRIPEPIPMPPAACQATITPTSNGMYT 355
P +PP Q+ P Q+K +EL P P PP SNG+ T
Sbjct: 10 PAIPPPQVEHSPPQEKPGNAELFSPAPPSPPPPKITMMDIVNSNGILT 57
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 29.5 bits (63), Expect = 7.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 117 RQEKTPAPQPSKVNNKQKAVTQPAPQGSNKKE 148
+Q+++P PQPSK + K QP P+ S K E
Sbjct: 456 KQKESPKPQPSKPEDSPKP-EQPKPEESPKPE 486
>At3g22070.1 68416.m02785 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 178
Score = 29.1 bits (62), Expect = 9.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 307 PMFHPDLPPVQISAEPQQQKSELRIPEPIPMPPAACQATITPTS 350
P F P P + + P +++ IP P P P +A P+S
Sbjct: 120 PEFSPPPPDLDTTTAPPPPSTDIPIPPPPPAPVSASPPLTPPSS 163
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.1 bits (62), Expect = 9.3
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 289 ATELPESR--DGTKMVTLRNPMFHPDLPPVQISAEPQQQKSELRIPEPIPMPPAACQATI 346
AT P S+ + T +++ NP +P L P Q + L P P PPA +++
Sbjct: 9 ATGDPNSQKPESTTPISIPNPNPNPSLTPPPPQQHSQPPVAPLVPPGPPYAPPAQIPSSL 68
Query: 347 TPTS 350
PT+
Sbjct: 69 LPTN 72
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.129 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,731,682
Number of Sequences: 28952
Number of extensions: 525792
Number of successful extensions: 1251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1240
Number of HSP's gapped (non-prelim): 14
length of query: 633
length of database: 12,070,560
effective HSP length: 86
effective length of query: 547
effective length of database: 9,580,688
effective search space: 5240636336
effective search space used: 5240636336
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)
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