GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001772-TA|BGIBMGA001772-PA|undefined
         (633 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   1.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   6.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   6.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   6.4  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 314 PPVQISAEPQQQKSELRIPEPI 335
           PP QISA+P   +S  +I +P+
Sbjct: 332 PPYQISAQPTPSQSPNQIYQPV 353


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 410 PRPESRLETSPNPIGTRPESNGASLFANQ 438
           P P    +   NP+GT P      L  NQ
Sbjct: 737 PPPHPHHQPPRNPVGTNPHDINNPLSVNQ 765


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 410 PRPESRLETSPNPIGTRPESNGASLFANQ 438
           P P    +   NP+GT P      L  NQ
Sbjct: 629 PPPHPHHQPPRNPVGTNPHDINNPLSVNQ 657


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 406 LRSFPRPESRLETSPNPIGTRPES 429
           + S+  PE  + T+P P   RP S
Sbjct: 394 MNSYSVPEPTISTTPRPEWARPPS 417


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.129    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,926
Number of Sequences: 317
Number of extensions: 5069
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 633
length of database: 114,650
effective HSP length: 61
effective length of query: 572
effective length of database: 95,313
effective search space: 54519036
effective search space used: 54519036
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)