GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001772-TA|BGIBMGA001772-PA|undefined
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    31   0.49 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    30   1.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   2.6  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    28   4.5  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    28   4.5  

>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 168 TAHTTIEAVNKKVMAASELEKPPSCSIMDQLSSG 201
           TAHT  E V+  +   S L   P+C I+D++  G
Sbjct: 454 TAHTVHEKVSSAISNHSALSSQPTCVIVDEIDGG 487


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 47/217 (21%), Positives = 77/217 (35%), Gaps = 16/217 (7%)

Query: 306 NPMFHPDLPPVQISAEPQQQKSELRIPEPIPMPPAACQATITPTSNGMYTIRNPLMSMMH 365
           NP +   +P V +S  P    + + +  P     +  Q   T  SNG     N  +    
Sbjct: 128 NPSYPVFIPQVGMSVAPPVATAAVSMSYPHHYSASVQQQQATFVSNGQP--HN--LPAQA 183

Query: 366 QQRAPHPRPDQLHDRMLSLSSFTQGNDEGYSLFRSNDEGRLRSFPRPESRLETSPNPIGT 425
           Q    +  PD LH      +    G   G    RS  + RL S    +     + N +  
Sbjct: 184 QPATIYGIPDALHTTQNGTTIHVTGTPPGAVSQRSEPDSRLSSMNEMQLLASAAANQLDA 243

Query: 426 RP-----ESNGASLF-ANQRPDPVRAADYAGPLYTPFGQEDGNLF---RNALFTDSRDAP 476
            P     +S+G +L   +  P P +  +  G L +       +L       L ++S    
Sbjct: 244 APRITPTKSSGVNLMPLSNAPSPPKQMNVVGSLPSSSNTSPNHLASVPNRGLTSNSSTGS 303

Query: 477 DLKADDPGQHHLANGDSLPYFQRLRVGSKLNSEISVH 513
             K  +   + L +  S+   Q   + SK NS  S+H
Sbjct: 304 FTKYTNGSSNSLYSNSSM---QTPYLPSKSNSSTSLH 337


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 311 PDLPPVQISAEPQQQKSELRIPEPIPMPPAACQATITPTSN 351
           P +PP   S+ P ++   L  P P P+PP +     +P ++
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNS 270


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 307 PMFHPDLPPVQISAEPQQQKSELRIPEPIPMPPAACQATITPTSNGMYTIRNPLMS 362
           P F   +PP+  SA PQ   +E+ +P   P+PP+  +A+     N     +NP +S
Sbjct: 133 PAFQ-QIPPIHQSAYPQNNVAEVLMP---PIPPSV-EASSGQNFNQGIASQNPAIS 183


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 305 RNPMFHPDLPPVQISAEPQQQKSELRIPEPIPMPPAACQATITPTSNGMY---TIRNPLM 361
           +NP+ H     V I  + Q+ +    + + +  P  A     +P+   +    + R PL+
Sbjct: 717 QNPLLHATKSLVSIHQQSQRGEMVSTLKQALSRPHTASTVVRSPSEINLTRQTSNRVPLL 776

Query: 362 SMMHQQRAPHPRPDQ 376
            M++  RA  P P Q
Sbjct: 777 DMLNLNRAMSPTPIQ 791


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.129    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,143
Number of Sequences: 5004
Number of extensions: 95624
Number of successful extensions: 210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 6
length of query: 633
length of database: 2,362,478
effective HSP length: 77
effective length of query: 556
effective length of database: 1,977,170
effective search space: 1099306520
effective search space used: 1099306520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)