GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001772-TA|BGIBMGA001772-PA|undefined
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         39   0.014
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)            33   0.92 
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   1.2  
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   1.6  
SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.6  
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.8  
SB_39925| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   6.5  
SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07)             30   6.5  
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   6.5  
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   6.5  
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)                  30   6.5  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.6  

>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 38.7 bits (86), Expect = 0.014
 Identities = 41/199 (20%), Positives = 76/199 (38%), Gaps = 13/199 (6%)

Query: 270 APSPQATXXXXXXXXXXXNATELPESRD-GTKMVTLRNPMFHPDLPPVQISAEPQQQKSE 328
           +P P A+            A+ +  S   G K  ++ N    P+ PP   S    +  ++
Sbjct: 514 SPGPAASKAVVRSESNIVQASVMQCSYGAGVKQTSVVNGQNSPNTPPCSPSRNVNKPTNK 573

Query: 329 -LRIPEPIPMPPAACQATITPTSNGMYTIRNPLMSMMHQQRAPHPRPDQLHDRML----- 382
              + +P P+PP   ++ + PT+  +    +  +   +  + P P+   L D +      
Sbjct: 574 HFSLVKPPPLPPPPAESVLHPTAPSVVQKTDTSLGQSYLSKLPSPQKKPLEDLVAVECAE 633

Query: 383 ---SLSSFTQGNDEGYS---LFRSNDEGRLRSFPRPESRLETSPNPIGTRPESNGASLFA 436
               LSS    +++  S   L  + DE    +  + + +L+  P P    P   G+SL  
Sbjct: 634 PSSKLSSSATPHEKSSSIPVLLTTADEQTRTTTSQEQEKLKKVPPPPPPLPVIEGSSLSV 693

Query: 437 NQRPDPVRAADYAGPLYTP 455
              P P      +G L  P
Sbjct: 694 PPPPPPPPPPLLSGTLPMP 712


>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
          Length = 496

 Score = 32.7 bits (71), Expect = 0.92
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 305 RNPMFHPDLPPVQISAEPQQQK---SELRIPEP---IPMPPAACQATITPTSNGMYTIRN 358
           R P  HP  PP  +   P   +   S LR P P    P  P     +++P  + ++ IR 
Sbjct: 389 RYPSSHPRYPPSHLRYPPSSLRYLPSHLRYPPPPLRYPPSPLRYPPSLSPICHHLFAIRL 448

Query: 359 PLMSMMHQQRAPHPRP 374
            L ++ HQ     P P
Sbjct: 449 HLPAIRHQLPLYPPSP 464


>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 32.3 bits (70), Expect = 1.2
 Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 14/196 (7%)

Query: 302 VTLRNPMFHPDLPPVQISAEPQQQKSELRIPEPI-PMPPAACQATITPTSNGMYTIRNPL 360
           VT ++P   P LPP +++ +P        +P P  P+PP  C A + P +   ++    L
Sbjct: 743 VTTKSPPA-PPLPP-KVTPKPPAPPQFAPVPPPCAPIPPMPCSAPL-PPAPAPFSAAPHL 799

Query: 361 MSMMHQQRAPHPRPDQLHDRMLSLSSFTQGNDEGYSLFRSNDEGRLRSFPRPESRLETSP 420
               +    P P P        S S+ +Q + E  S  R      + + P P   +   P
Sbjct: 800 PPAPNISAEPPPPPPVARKPSRSNSTSSQRSLELQSPSREEGPSLITAEPPPPPPVARKP 859

Query: 421 NPIGTRPESNGASLFANQRPDPVRAADYAGPLYTPFGQEDGNLFRNALFTDSRDAPDLKA 480
           +   +   S+  S+ +     P  A D+  P   P  ++     R     +SR  P L  
Sbjct: 860 S--RSNSTSSQQSIESAPGSPPTGADDFPPPPPPPVMKKPS---RGGSLKESRLHPPL-- 912

Query: 481 DDPGQHHLANG-DSLP 495
             P  H   +  DSLP
Sbjct: 913 --PSIHGSTDSLDSLP 926


>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 315 PVQISAEPQQQKSELRIPEPIPMPPAACQATITPTSNGM-YTIRNPLMSMMHQQRAPHPR 373
           P+ + + PQ +K  +  P P+P PP      I P    +   +R P M        P  R
Sbjct: 460 PIPVHSPPQIEKVPIPFPYPVPSPP-----QIKPMPYPVPVPVRQPPMIQRFYYPVPVSR 514

Query: 374 PDQLH 378
           P Q+H
Sbjct: 515 PGQIH 519


>SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 440 PDPVRAADYAGPLYTPFGQEDGNLFRNALFTDSRDAPDLKADDPGQHHLANGDSLPYFQR 499
           P+PV+       ++    ++DG     +    S D P   +DD  Q   ANG S+P    
Sbjct: 391 PEPVKKIFLCSMIHAK--EQDGFYHCKSCLDFSGDGPPFSSDDTSQE--ANGSSIPSINE 446

Query: 500 LRVGSKLNSEIS 511
              G+ L SE S
Sbjct: 447 AHQGNGLGSENS 458


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 8/68 (11%)

Query: 382 LSLSSFTQGNDEGYSLFRSNDEGRLRSFPRP-----ESRLETSPNPIGTRPESNGASLFA 436
           LS+SS T   D   +++ +N +G  RS P P     ES+L TS    G R      S + 
Sbjct: 395 LSVSSSTSSLD---NIYMANTDGARRSVPAPPPRRSESKLLTSFRTRGKRDTPQVVSSYE 451

Query: 437 NQRPDPVR 444
           +  PDP +
Sbjct: 452 SSPPDPTQ 459


>SB_39925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 336 PMPPAACQATITPTSNGMYTIRNPLMSMMHQQRAPHPRP 374
           P  PA    + T T N   T  +P  ++ HQ R P P P
Sbjct: 20  PSAPATIPHSTTNTDNSSTTSLSPNSNIRHQFRPPQPHP 58


>SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07)
          Length = 436

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 336 PMPPAACQATITPTSNGMYTIRNPLMSMMHQQRAPHPRP 374
           P  PA    + T T N   T  +P  ++ HQ R P P P
Sbjct: 128 PSAPATIPHSTTNTDNSSTTSLSPNSNIRHQFRPPQPHP 166


>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1283

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 44/180 (24%), Positives = 62/180 (34%), Gaps = 23/180 (12%)

Query: 365  HQQRAPHPRPDQL-HDRMLSLSSFTQGNDEGYSLFRS--NDEGRLRSFPRPESRLETSPN 421
            H  R PH  PD+L HDR         G D   + +R    + G +   P P       P+
Sbjct: 941  HPDRHPHDHPDRLTHDR----PGLIMGQDRHMADYREPHREPGGVHEGPFPH-----QPH 991

Query: 422  PIGTRPESNGASLFANQRPDPVRAADYAGPLYTPFGQEDGNLFRNALFTDS--RDAPDLK 479
            P G +P +     F + RP     A + GP+  P     G L    L   S  R A  + 
Sbjct: 992  PNGHQPMA-----FGHGRPRGDVPAHHGGPI--PISDGPGGLQGPPLIPGSPHRGASPMP 1044

Query: 480  ADDPGQHHLANGDSLPYFQRLRVGSKLNSEISVHHVSDSKFFKTPDGSPVEAAPLDDPRH 539
             + P    +        F++L     + +      V       TP G P    P   P H
Sbjct: 1045 HEPPTPTRMEKKTVDDLFRKLCQAGIIKT--VTQEVETPPRVATPPGQPPLPVPRPAPAH 1102


>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 42/222 (18%), Positives = 74/222 (33%), Gaps = 13/222 (5%)

Query: 258  PSLMMFSTSQPEAPSPQATXXXXXXXXXXXNATELPESRDGTKMVTLRNPMFHPDLPPVQ 317
            PS     T Q +   PQ                E PES+D T+  T             Q
Sbjct: 1009 PSKQQVKTQQKKKVQPQLVEQGYEESSGAATQMEEPESKDSTQEKTQEKDQSQQAPEQAQ 1068

Query: 318  ISAEPQQQ-----KSELRIPEPIPMPPAACQATITPTSNGMYTIRNPLMSMMHQ---QRA 369
             + E Q++     + EL + +  P+     Q + T       +   P+     +   Q+A
Sbjct: 1069 ETQESQEESVKPTQQELAVQQATPLNQQQIQESSTQVLEKQQSQEQPVKQTQQKTDVQQA 1128

Query: 370  PHPRPDQLHDRMLSLSSFTQGNDEGYSLFRSNDEGRLRSFPRPESRLETSP--NPIGTRP 427
                P +  + +      TQ   +G  + + ++E   +     +  LE  P  N      
Sbjct: 1129 TLQEPQRQEESLTKQVQETQ-QSQGQPV-KQSEETAPKQTDEEQQSLENPPQKNTKAIHV 1186

Query: 428  ESNGASLFANQRP-DPVRAADYAGPLYTPFGQEDGNLFRNAL 468
            +    +    + P  P +  D+        G+E   LF +AL
Sbjct: 1187 QETQQTQTLQETPKQPRKQKDHKQTKQQQAGKEQSLLFSDAL 1228


>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
          Length = 682

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 44/180 (24%), Positives = 62/180 (34%), Gaps = 23/180 (12%)

Query: 365 HQQRAPHPRPDQL-HDRMLSLSSFTQGNDEGYSLFRS--NDEGRLRSFPRPESRLETSPN 421
           H  R PH  PD+L HDR         G D   + +R    + G +   P P       P+
Sbjct: 74  HPDRHPHDHPDRLTHDR----PGLIMGQDRHMADYREPHREPGGVHEGPFPH-----QPH 124

Query: 422 PIGTRPESNGASLFANQRPDPVRAADYAGPLYTPFGQEDGNLFRNALFTDS--RDAPDLK 479
           P G +P +     F + RP     A + GP+  P     G L    L   S  R A  + 
Sbjct: 125 PNGHQPMA-----FGHGRPRGDVPAHHGGPI--PISDGPGGLQGPPLIPGSPHRGASPMP 177

Query: 480 ADDPGQHHLANGDSLPYFQRLRVGSKLNSEISVHHVSDSKFFKTPDGSPVEAAPLDDPRH 539
            + P    +        F++L     + +      V       TP G P    P   P H
Sbjct: 178 HEPPTPTRMEKKTVDDLFRKLCQAGIIKT--VTQEVETPPRVATPPGQPPLPVPRPAPAH 235


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 299  TKMVTLRNPMFH----PDLPPVQISAEPQQQKSELRIPEPIPMPPAA 341
            T    ++ PM H       PP Q+   PQQQ ++++  +P+P+ P+A
Sbjct: 2634 TTQQLMQGPMMHLAGKQQQPPAQL---PQQQPTQVKKQQPLPIAPSA 2677


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.129    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,314,609
Number of Sequences: 59808
Number of extensions: 735392
Number of successful extensions: 1830
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1822
Number of HSP's gapped (non-prelim): 20
length of query: 633
length of database: 16,821,457
effective HSP length: 87
effective length of query: 546
effective length of database: 11,618,161
effective search space: 6343515906
effective search space used: 6343515906
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)